Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34510 * 125.79328 * 2 1 4 4 C 1.41386 * 106.84296 * 179.74511 * 3 2 1 5 5 C 1.34512 * 106.83764 * 0.37394 * 4 3 2 6 6 C 1.50703 * 125.78899 * 179.88708 * 5 4 3 7 7 H 1.09002 * 109.47152 * 339.71478 * 6 5 4 8 8 C 1.50701 * 109.47064 * 99.71385 * 6 5 4 9 9 H 1.07995 * 119.99918 * 239.99869 * 8 6 5 10 10 C 1.37880 * 119.99755 * 60.00177 * 8 6 5 11 11 N 1.31515 * 120.00246 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 119.99777 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46996 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46882 * 120.00121 * 12 10 8 15 15 H 1.48506 * 109.46980 * 239.99906 * 12 10 8 16 16 N 1.46896 * 109.46997 * 219.71415 * 6 5 4 17 17 C 1.46903 * 110.99908 * 155.00060 * 16 6 5 18 18 C 1.52995 * 109.47247 * 154.99976 * 17 16 6 19 19 C 1.52998 * 109.47147 * 275.00225 * 17 16 6 20 20 O 1.34299 * 125.78834 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.47587 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47037 * 300.01056 * 1 2 3 23 23 H 1.09007 * 109.46728 * 60.00126 * 1 2 3 24 24 H 1.08004 * 126.57813 * 0.02562 * 3 2 1 25 25 H 1.08001 * 126.58365 * 180.23230 * 4 3 2 26 26 H 0.97001 * 120.00170 * 179.97438 * 11 10 8 27 27 H 1.00895 * 111.00219 * 31.05155 * 16 6 5 28 28 H 1.09001 * 109.46941 * 35.00074 * 17 16 6 29 29 H 1.09001 * 109.47069 * 60.00177 * 18 17 16 30 30 H 1.09004 * 109.47211 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47430 * 300.00269 * 18 17 16 32 32 H 1.08999 * 109.47517 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47077 * 299.99766 * 19 17 16 34 34 H 1.09000 * 109.47197 * 59.99804 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0060 5 6 3.5814 -0.7123 0.0009 6 6 4.7705 -1.6380 0.0020 7 1 5.6507 -1.0993 -0.3490 8 6 5.0144 -2.1409 1.4016 9 1 5.9563 -1.9411 1.8907 10 6 4.0349 -2.8560 2.0576 11 7 2.8877 -3.0989 1.4621 12 14 4.3374 -3.4799 3.7922 13 1 5.6971 -3.0773 4.2329 14 1 3.3261 -2.8981 4.7109 15 1 4.2297 -4.9610 3.8113 16 7 4.5058 -2.7762 -0.8881 17 6 5.7595 -3.3597 -1.3837 18 6 5.5277 -4.8253 -1.7564 19 6 6.2283 -2.5874 -2.6185 20 8 2.2924 -1.0894 0.0005 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.9666 2.1204 0.0004 25 1 4.5213 1.2431 0.0112 26 1 2.1988 -3.6023 1.9235 27 1 3.9059 -2.5054 -1.6528 28 1 6.5210 -3.2985 -0.6062 29 1 4.7662 -4.8865 -2.5339 30 1 6.4582 -5.2584 -2.1238 31 1 5.1938 -5.3755 -0.8768 32 1 7.1583 -3.0205 -2.9866 33 1 5.4668 -2.6485 -3.3960 34 1 6.3934 -1.5432 -2.3530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = 11.847646 kcal Electronic energy + Delta-G solvation = -15897.340353 eV Core-core repulsion = 13410.907856 eV Total energy + Delta-G solvation = -2486.432497 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20878 -36.48547 -33.09784 -31.87993 -31.19296 -29.74298 -26.47407 -26.42653 -24.98068 -21.68864 -20.53172 -19.68839 -18.93794 -16.34460 -15.51654 -14.93084 -14.53283 -14.12807 -14.00935 -13.12475 -13.02490 -12.50509 -12.38843 -12.14650 -11.92309 -11.78993 -11.63456 -11.48834 -11.01908 -10.92197 -10.74804 -10.55010 -10.37132 -9.98827 -9.76936 -9.46646 -8.64828 -8.44928 -7.02524 -6.86343 -5.85906 -4.04788 3.02472 3.32849 3.41069 3.43845 3.75962 4.27166 4.48257 5.25119 5.48649 5.66348 5.70523 5.84845 5.97413 5.99343 6.01505 6.08756 6.21932 6.26898 6.38676 6.39782 6.47760 6.56852 6.71909 6.91462 6.95249 7.07786 7.10925 7.39330 7.68199 7.87755 8.12456 8.36399 8.62426 8.83062 9.08815 9.63766 11.12480 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.013873 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.435107 B = 2017.766255 C = 3003.525836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.066 4.066 3 C -0.221 4.221 4 C -0.279 4.279 5 C 0.078 3.922 6 C 0.284 3.716 7 H 0.023 0.977 8 C -0.531 4.531 9 H 0.058 0.942 10 C 0.089 3.911 11 N -0.817 5.817 12 Si 0.881 3.119 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.283 1.283 16 N -0.645 5.645 17 C 0.084 3.916 18 C -0.130 4.130 19 C -0.181 4.181 20 O -0.106 6.106 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.256 0.744 27 H 0.309 0.691 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 2.395 -5.163 5.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C -0.240 4.240 4 C -0.299 4.299 5 C 0.024 3.976 6 C 0.177 3.823 7 H 0.040 0.960 8 C -0.569 4.569 9 H 0.076 0.924 10 C -0.120 4.120 11 N -0.450 5.450 12 Si 0.709 3.291 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.209 1.209 16 N -0.275 5.275 17 C -0.027 4.027 18 C -0.188 4.188 19 C -0.240 4.240 20 O 0.002 5.998 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.786 1.543 -4.627 4.941 hybrid contribution 0.428 0.708 0.509 0.971 sum -0.357 2.251 -4.119 4.707 Atomic orbital electron populations 1.20029 0.87144 1.02989 1.01566 1.22235 0.93820 0.86068 1.09625 1.21201 0.93334 0.97986 1.11508 1.21231 0.96908 0.94507 1.17251 1.23589 0.83825 0.93645 0.96546 1.17811 0.85278 0.85211 0.93982 0.95969 1.20858 1.01445 1.36637 0.97922 0.92397 1.24931 0.95053 0.95127 0.96932 1.70058 1.04044 1.35287 1.35566 0.86735 0.78259 0.78689 0.85431 1.19851 1.21218 1.20937 1.60940 1.12416 1.34634 1.19463 1.21411 0.93603 0.93734 0.93906 1.21689 0.99329 0.96610 1.01170 1.22604 1.00707 1.00798 0.99918 1.84450 1.15721 1.31603 1.68047 0.91165 0.91341 0.91359 0.85745 0.85604 0.93369 0.87358 0.90525 0.93826 0.94206 0.92071 0.93363 0.93373 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.42 36.01 0.38 -0.61 16 2 C -0.07 -1.43 7.32 -35.63 -0.26 -1.69 16 3 C -0.22 -4.64 10.81 -39.70 -0.43 -5.07 16 4 C -0.28 -6.37 10.80 -39.70 -0.43 -6.80 16 5 C 0.08 1.95 5.27 -35.62 -0.19 1.76 16 6 C 0.28 7.01 2.47 -70.02 -0.17 6.84 16 7 H 0.02 0.54 7.10 -51.93 -0.37 0.17 16 8 C -0.53 -14.42 8.55 -34.44 -0.29 -14.71 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.09 2.44 5.23 -17.82 -0.09 2.35 16 11 N -0.82 -22.88 10.38 55.43 0.58 -22.31 16 12 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 N -0.64 -14.80 5.35 -102.18 -0.55 -15.34 16 17 C 0.08 1.64 3.01 -67.71 -0.20 1.44 16 18 C -0.13 -2.30 9.52 37.16 0.35 -1.95 16 19 C -0.18 -2.96 9.15 37.16 0.34 -2.62 16 20 O -0.11 -2.68 8.62 5.72 0.05 -2.63 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 25 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.31 6.98 8.09 -39.29 -0.32 6.66 16 28 H 0.08 1.61 7.64 -51.93 -0.40 1.21 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.05 0.82 7.43 -51.93 -0.39 0.43 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -29.09 285.36 -6.89 -35.98 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.24 Total: 4.83 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.00 Total: -21.07 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.03 Total: -37.65 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.05 Total: -2.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.09 -6.89 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.823 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds