Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34510 * 125.79328 * 2 1 4 4 C 1.41386 * 106.84296 * 179.74511 * 3 2 1 5 5 C 1.34512 * 106.83764 * 0.37394 * 4 3 2 6 6 C 1.50703 * 125.78899 * 179.88708 * 5 4 3 7 7 H 1.09002 * 109.47152 * 339.71478 * 6 5 4 8 8 C 1.50701 * 109.47064 * 99.71385 * 6 5 4 9 9 H 1.07995 * 119.99918 * 239.99869 * 8 6 5 10 10 C 1.37880 * 119.99755 * 60.00177 * 8 6 5 11 11 N 1.31515 * 120.00246 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 119.99777 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46996 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46882 * 120.00121 * 12 10 8 15 15 H 1.48506 * 109.46980 * 239.99906 * 12 10 8 16 16 N 1.46896 * 109.46997 * 219.71415 * 6 5 4 17 17 C 1.46903 * 110.99908 * 155.00060 * 16 6 5 18 18 C 1.52995 * 109.47247 * 154.99976 * 17 16 6 19 19 C 1.52998 * 109.47147 * 275.00225 * 17 16 6 20 20 O 1.34299 * 125.78834 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.47587 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47037 * 300.01056 * 1 2 3 23 23 H 1.09007 * 109.46728 * 60.00126 * 1 2 3 24 24 H 1.08004 * 126.57813 * 0.02562 * 3 2 1 25 25 H 1.08001 * 126.58365 * 180.23230 * 4 3 2 26 26 H 0.97001 * 120.00170 * 179.97438 * 11 10 8 27 27 H 1.00895 * 111.00219 * 31.05155 * 16 6 5 28 28 H 1.09001 * 109.46941 * 35.00074 * 17 16 6 29 29 H 1.09001 * 109.47069 * 60.00177 * 18 17 16 30 30 H 1.09004 * 109.47211 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47430 * 300.00269 * 18 17 16 32 32 H 1.08999 * 109.47517 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47077 * 299.99766 * 19 17 16 34 34 H 1.09000 * 109.47197 * 59.99804 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0060 5 6 3.5814 -0.7123 0.0009 6 6 4.7705 -1.6380 0.0020 7 1 5.6507 -1.0993 -0.3490 8 6 5.0144 -2.1409 1.4016 9 1 5.9563 -1.9411 1.8907 10 6 4.0349 -2.8560 2.0576 11 7 2.8877 -3.0989 1.4621 12 14 4.3374 -3.4799 3.7922 13 1 5.6971 -3.0773 4.2329 14 1 3.3261 -2.8981 4.7109 15 1 4.2297 -4.9610 3.8113 16 7 4.5058 -2.7762 -0.8881 17 6 5.7595 -3.3597 -1.3837 18 6 5.5277 -4.8253 -1.7564 19 6 6.2283 -2.5874 -2.6185 20 8 2.2924 -1.0894 0.0005 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.9666 2.1204 0.0004 25 1 4.5213 1.2431 0.0112 26 1 2.1988 -3.6023 1.9235 27 1 3.9059 -2.5054 -1.6528 28 1 6.5210 -3.2985 -0.6062 29 1 4.7662 -4.8865 -2.5339 30 1 6.4582 -5.2584 -2.1238 31 1 5.1938 -5.3755 -0.8768 32 1 7.1583 -3.0205 -2.9866 33 1 5.4668 -2.6485 -3.3960 34 1 6.3934 -1.5432 -2.3530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = -5.648264 kcal Electronic energy + Delta-G solvation = -15898.099033 eV Core-core repulsion = 13410.907856 eV Total energy + Delta-G solvation = -2487.191177 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.95825 -38.17001 -34.94580 -33.58065 -32.96497 -31.35356 -28.20485 -27.85428 -26.77350 -23.48993 -22.27400 -21.30017 -20.66308 -18.31305 -17.23805 -16.83387 -16.35517 -15.75514 -15.64136 -14.85265 -14.61014 -14.03249 -13.86772 -13.58604 -13.53652 -13.45254 -13.20029 -12.98087 -12.85487 -12.61274 -12.50759 -12.15594 -11.96748 -11.80262 -11.52237 -11.37314 -10.51482 -10.37178 -8.76018 -8.63034 -7.89315 -6.15278 1.29950 1.40613 1.43299 1.51417 2.01553 2.47082 2.63093 3.29429 3.75827 4.18749 4.22289 4.41506 4.46457 4.52696 4.62867 4.69805 4.80121 4.81543 4.87755 4.99687 5.03828 5.05470 5.15900 5.23117 5.34413 5.47030 5.60033 5.65558 5.78890 6.02151 6.16547 6.53552 6.81415 6.99633 7.20889 7.55407 9.05257 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.013873 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.435107 B = 2017.766255 C = 3003.525836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.076 4.076 3 C -0.226 4.226 4 C -0.283 4.283 5 C 0.044 3.956 6 C 0.286 3.714 7 H 0.020 0.980 8 C -0.551 4.551 9 H 0.047 0.953 10 C 0.050 3.950 11 N -0.836 5.836 12 Si 0.935 3.065 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.281 1.281 16 N -0.657 5.657 17 C 0.079 3.921 18 C -0.122 4.122 19 C -0.169 4.169 20 O -0.134 6.134 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.159 0.841 25 H 0.138 0.862 26 H 0.252 0.748 27 H 0.309 0.691 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 2.939 -5.727 6.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.127 4.127 3 C -0.245 4.245 4 C -0.303 4.303 5 C -0.009 4.009 6 C 0.179 3.821 7 H 0.038 0.962 8 C -0.589 4.589 9 H 0.065 0.935 10 C -0.157 4.157 11 N -0.469 5.469 12 Si 0.762 3.238 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.206 1.206 16 N -0.287 5.287 17 C -0.031 4.031 18 C -0.179 4.179 19 C -0.228 4.228 20 O -0.028 6.028 21 H 0.083 0.917 22 H 0.107 0.893 23 H 0.119 0.881 24 H 0.176 0.824 25 H 0.156 0.844 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.168 2.086 -5.196 5.720 hybrid contribution 0.551 0.592 0.636 1.028 sum -0.617 2.678 -4.560 5.324 Atomic orbital electron populations 1.20237 0.83601 1.03513 1.04081 1.23273 0.95975 0.85405 1.08049 1.21568 0.92271 0.99566 1.11107 1.21577 0.98499 0.94127 1.16106 1.23570 0.84036 0.94350 0.98963 1.17672 0.85626 0.85623 0.93215 0.96197 1.21089 1.01101 1.37237 0.99448 0.93519 1.25483 0.94984 0.95427 0.99836 1.70193 1.04396 1.35859 1.36454 0.85890 0.77977 0.78129 0.81813 1.19635 1.21273 1.20649 1.60781 1.14228 1.34034 1.19697 1.21495 0.91801 0.95122 0.94715 1.21609 1.01060 0.95039 1.00233 1.22431 1.02092 0.99822 0.98410 1.84395 1.16159 1.33466 1.68735 0.91658 0.89325 0.88138 0.82387 0.84364 0.93813 0.87404 0.92633 0.93107 0.91122 0.94713 0.90776 0.92473 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.42 71.24 0.74 -1.00 16 2 C -0.08 -3.18 7.32 24.83 0.18 -2.99 16 3 C -0.23 -9.08 10.81 22.19 0.24 -8.84 16 4 C -0.28 -12.78 10.80 22.19 0.24 -12.54 16 5 C 0.04 2.23 5.27 24.83 0.13 2.36 16 6 C 0.29 14.43 2.47 43.43 0.11 14.54 16 7 H 0.02 0.99 7.10 -2.39 -0.02 0.98 16 8 C -0.55 -30.59 8.55 25.60 0.22 -30.37 16 9 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 10 C 0.05 2.78 5.23 84.66 0.44 3.22 16 11 N -0.84 -47.53 10.38 21.45 0.22 -47.30 16 12 Si 0.94 44.26 29.54 68.60 2.03 46.28 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 N -0.66 -30.65 5.35 -477.18 -2.55 -33.20 16 17 C 0.08 3.06 3.01 44.91 0.13 3.20 16 18 C -0.12 -4.19 9.52 71.98 0.69 -3.50 16 19 C -0.17 -5.27 9.15 71.98 0.66 -4.62 16 20 O -0.13 -6.81 8.62 -2.44 -0.02 -6.83 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 24 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 25 H 0.14 5.68 8.06 -2.91 -0.02 5.66 16 26 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.31 14.16 8.09 -89.70 -0.73 13.43 16 28 H 0.06 2.37 7.64 -2.39 -0.02 2.35 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 34 H 0.04 1.31 7.43 -2.39 -0.02 1.29 16 Total: -1.00 -62.73 285.36 3.80 -58.92 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.35 Total: 22.68 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 3.78 Total: -40.55 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.33 Total: -80.50 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.02 Total: -6.83 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.73 3.80 -58.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.273 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds