Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50690 * 109.47526 * 2 1 4 4 N 1.34485 * 126.16685 * 90.02234 * 3 2 1 5 5 C 1.30258 * 108.70349 * 179.73948 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47290 * 120.00039 * 6 5 4 8 8 C 1.53003 * 109.47268 * 240.00045 * 6 5 4 9 9 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 10 10 C 1.34334 * 126.17109 * 269.71470 * 3 2 1 11 11 C 1.50703 * 126.43831 * 0.23940 * 10 3 2 12 12 C 1.50702 * 109.46984 * 89.99975 * 11 10 3 13 13 H 1.07998 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99634 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00324 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46957 * 59.99640 * 16 14 12 18 18 H 1.48496 * 109.47409 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46772 * 300.00256 * 16 14 12 20 20 H 1.09004 * 109.46852 * 60.00099 * 1 2 3 21 21 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47294 * 300.00025 * 1 2 3 23 23 H 1.09002 * 109.47029 * 239.99938 * 2 1 3 24 24 H 1.09000 * 109.46835 * 120.00392 * 2 1 3 25 25 H 1.09007 * 109.47327 * 0.02562 * 6 5 4 26 26 H 1.09000 * 109.47458 * 179.97438 * 7 6 5 27 27 H 1.09002 * 109.47100 * 300.00192 * 7 6 5 28 28 H 1.09007 * 109.46777 * 59.99858 * 7 6 5 29 29 H 1.09004 * 109.46892 * 60.00051 * 8 6 5 30 30 H 1.09000 * 109.47196 * 180.02562 * 8 6 5 31 31 H 1.08993 * 109.47150 * 300.00233 * 8 6 5 32 32 H 1.09000 * 109.47084 * 209.99993 * 11 10 3 33 33 H 1.09000 * 109.47303 * 330.00286 * 11 10 3 34 34 H 0.96998 * 119.99858 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2974 2.1688 1.0857 5 6 2.7168 3.3384 0.6948 6 6 3.1202 4.4736 1.6000 7 6 4.5803 4.8446 1.3331 8 6 2.2277 5.6860 1.3263 9 8 2.7294 3.3661 -0.6446 10 6 2.3018 2.1664 -1.0844 11 6 2.1536 1.7410 -2.5226 12 6 0.7663 2.0775 -3.0055 13 1 0.0622 2.5514 -2.3377 14 6 0.3959 1.7802 -4.2999 15 7 1.2531 1.2025 -5.1129 16 14 -1.3240 2.1965 -4.8983 17 1 -1.5450 3.6609 -4.7892 18 1 -1.4696 1.7786 -6.3158 19 1 -2.3244 1.4816 -4.0656 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0079 4.1667 2.6399 26 1 4.8719 5.6661 1.9875 27 1 5.2161 3.9810 1.5281 28 1 4.6929 5.1514 0.2932 29 1 1.1875 5.4216 1.5165 30 1 2.5198 6.5073 1.9808 31 1 2.3404 5.9927 0.2866 32 1 2.8882 2.2651 -3.1340 33 1 2.3152 0.6660 -2.6020 34 1 0.9925 0.9930 -6.0234 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -15.560261 kcal Electronic energy + Delta-G solvation = -15429.195143 eV Core-core repulsion = 12941.574149 eV Total energy + Delta-G solvation = -2487.620993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.53244 -35.58508 -34.77396 -33.45295 -31.96254 -30.02753 -27.14127 -26.69852 -23.74118 -23.32541 -21.50640 -20.57239 -19.08114 -16.63789 -15.93261 -15.56835 -15.02762 -14.67165 -14.12951 -13.51521 -13.26548 -13.06713 -12.49509 -12.28425 -12.12574 -11.93198 -11.71593 -11.35291 -11.21607 -11.01752 -10.86919 -10.84934 -10.71679 -10.35740 -10.16917 -10.15099 -9.63758 -9.55710 -8.54041 -7.59376 -6.16278 -4.21431 2.35545 3.26589 3.30682 3.32693 3.42782 3.49296 4.35253 4.47463 4.99477 5.14466 5.18836 5.28715 5.58665 5.63102 5.66638 5.84040 5.85597 5.92260 6.04288 6.11437 6.23607 6.25861 6.30771 6.42443 6.48466 6.78995 6.85473 6.97004 7.12548 7.31020 7.45739 7.77649 8.09787 8.56413 8.80257 9.42509 10.93088 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.008226 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.467018 B = 3402.991325 C = 3811.757090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C -0.053 4.053 4 N -0.478 5.478 5 C 0.147 3.853 6 C 0.012 3.988 7 C -0.148 4.148 8 C -0.148 4.148 9 O -0.200 6.200 10 C 0.023 3.977 11 C 0.094 3.906 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 3.939 10.252 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.172 4.172 4 N -0.208 5.208 5 C -0.059 4.059 6 C -0.007 4.007 7 C -0.205 4.205 8 C -0.206 4.206 9 O -0.086 6.086 10 C -0.031 4.031 11 C 0.057 3.943 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.091 0.909 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.700 3.724 10.663 11.612 hybrid contribution -0.873 0.393 -1.094 1.454 sum 1.827 4.116 9.568 10.575 Atomic orbital electron populations 1.21728 0.94982 1.00955 1.02628 1.19646 0.95908 0.88936 1.01877 1.21234 1.09285 0.99140 0.87581 1.70118 1.15884 1.02571 1.32199 1.25701 1.04089 0.96027 0.80120 1.19472 0.95893 0.89262 0.96099 1.21869 0.94310 1.01667 1.02699 1.21871 0.99629 0.96382 1.02743 1.84372 1.65504 1.35754 1.23006 1.24574 0.97159 0.81370 0.99962 1.17999 0.98547 0.97436 0.80270 1.20883 0.96743 1.40809 0.96987 0.92363 1.24954 0.97731 0.94820 0.96398 1.69925 1.34975 1.41320 1.06745 0.86533 0.84072 0.79011 0.77785 1.20104 1.21022 1.19928 0.90921 0.93081 0.93566 0.90404 0.91890 0.87908 0.91544 0.92235 0.91837 0.92162 0.91567 0.91756 0.94504 0.92593 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.89 37.16 0.37 -2.29 16 2 C -0.03 -0.49 6.27 -27.89 -0.17 -0.67 16 3 C -0.05 -1.17 6.36 -82.81 -0.53 -1.70 16 4 N -0.48 -10.09 11.29 -7.36 -0.08 -10.17 16 5 C 0.15 2.87 6.85 -12.95 -0.09 2.78 16 6 C 0.01 0.17 3.39 -91.78 -0.31 -0.14 16 7 C -0.15 -1.76 9.17 37.16 0.34 -1.42 16 8 C -0.15 -1.86 9.18 37.16 0.34 -1.52 16 9 O -0.20 -4.48 10.78 5.37 0.06 -4.42 16 10 C 0.02 0.54 6.58 -35.68 -0.23 0.30 16 11 C 0.09 2.44 5.31 -29.03 -0.15 2.28 16 12 C -0.52 -14.23 8.93 -34.44 -0.31 -14.54 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 H 0.07 1.51 7.98 -51.93 -0.41 1.10 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.46 7.16 -51.93 -0.37 1.08 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -30.01 291.51 -6.11 -36.12 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.35 Total: -2.05 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.85 Total: -15.26 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.65 Total: -34.93 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: 0.06 Total: -4.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.01 -6.11 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.558 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds