Wall clock time and date at job start Mon Mar 30 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50690 * 109.47526 * 2 1 4 4 N 1.34485 * 126.16685 * 90.02234 * 3 2 1 5 5 C 1.30258 * 108.70349 * 179.73948 * 4 3 2 6 6 C 1.50693 * 125.61806 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47290 * 120.00039 * 6 5 4 8 8 C 1.53003 * 109.47268 * 240.00045 * 6 5 4 9 9 O 1.33971 * 108.75981 * 0.02562 * 5 4 3 10 10 C 1.34334 * 126.17109 * 269.71470 * 3 2 1 11 11 C 1.50703 * 126.43831 * 0.23940 * 10 3 2 12 12 C 1.50702 * 109.46984 * 89.99975 * 11 10 3 13 13 H 1.07998 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99634 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00324 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46957 * 59.99640 * 16 14 12 18 18 H 1.48496 * 109.47409 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46772 * 300.00256 * 16 14 12 20 20 H 1.09004 * 109.46852 * 60.00099 * 1 2 3 21 21 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47294 * 300.00025 * 1 2 3 23 23 H 1.09002 * 109.47029 * 239.99938 * 2 1 3 24 24 H 1.09000 * 109.46835 * 120.00392 * 2 1 3 25 25 H 1.09007 * 109.47327 * 0.02562 * 6 5 4 26 26 H 1.09000 * 109.47458 * 179.97438 * 7 6 5 27 27 H 1.09002 * 109.47100 * 300.00192 * 7 6 5 28 28 H 1.09007 * 109.46777 * 59.99858 * 7 6 5 29 29 H 1.09004 * 109.46892 * 60.00051 * 8 6 5 30 30 H 1.09000 * 109.47196 * 180.02562 * 8 6 5 31 31 H 1.08993 * 109.47150 * 300.00233 * 8 6 5 32 32 H 1.09000 * 109.47084 * 209.99993 * 11 10 3 33 33 H 1.09000 * 109.47303 * 330.00286 * 11 10 3 34 34 H 0.96998 * 119.99858 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2974 2.1688 1.0857 5 6 2.7168 3.3384 0.6948 6 6 3.1202 4.4736 1.6000 7 6 4.5803 4.8446 1.3331 8 6 2.2277 5.6860 1.3263 9 8 2.7294 3.3661 -0.6446 10 6 2.3018 2.1664 -1.0844 11 6 2.1536 1.7410 -2.5226 12 6 0.7663 2.0775 -3.0055 13 1 0.0622 2.5514 -2.3377 14 6 0.3959 1.7802 -4.2999 15 7 1.2531 1.2025 -5.1129 16 14 -1.3240 2.1965 -4.8983 17 1 -1.5450 3.6609 -4.7892 18 1 -1.4696 1.7786 -6.3158 19 1 -2.3244 1.4816 -4.0656 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0079 4.1667 2.6399 26 1 4.8719 5.6661 1.9875 27 1 5.2161 3.9810 1.5281 28 1 4.6929 5.1514 0.2932 29 1 1.1875 5.4216 1.5165 30 1 2.5198 6.5073 1.9808 31 1 2.3404 5.9927 0.2866 32 1 2.8882 2.2651 -3.1340 33 1 2.3152 0.6660 -2.6020 34 1 0.9925 0.9930 -6.0234 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:26 Heat of formation + Delta-G solvation = -34.626954 kcal Electronic energy + Delta-G solvation = -15430.021937 eV Core-core repulsion = 12941.574149 eV Total energy + Delta-G solvation = -2488.447787 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.21730 -36.90191 -36.36042 -35.43012 -33.61011 -31.91010 -28.48791 -28.11030 -25.62735 -24.82134 -23.18291 -22.12529 -20.60886 -18.71998 -17.53129 -17.32500 -16.56527 -16.38671 -15.43583 -14.96308 -14.90379 -14.43848 -14.18821 -13.99648 -13.61445 -13.48660 -13.07357 -12.84834 -12.75322 -12.53929 -12.30787 -12.26889 -12.16230 -11.95423 -11.87739 -11.77007 -11.68514 -11.33506 -10.66678 -9.33935 -8.27291 -6.41447 0.66083 1.38615 1.40354 1.48896 1.74918 1.89579 2.37335 3.03413 3.04996 3.87652 3.94237 4.07710 4.08916 4.30741 4.48158 4.51951 4.65401 4.69908 4.74185 4.80631 4.88911 4.98407 4.99490 5.06816 5.19060 5.21864 5.28577 5.34940 5.42649 5.47084 5.56750 5.62697 5.99326 6.64198 6.88105 7.26580 8.81556 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.008226 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.467018 B = 3402.991325 C = 3811.757090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.044 4.044 4 N -0.497 5.497 5 C 0.165 3.835 6 C 0.008 3.992 7 C -0.143 4.143 8 C -0.145 4.145 9 O -0.216 6.216 10 C -0.022 4.022 11 C 0.108 3.892 12 C -0.531 4.531 13 H 0.049 0.951 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.275 1.275 19 H -0.265 1.265 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.010 0.990 33 H 0.045 0.955 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 4.694 11.894 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.163 4.163 4 N -0.227 5.227 5 C -0.042 4.042 6 C -0.011 4.011 7 C -0.201 4.201 8 C -0.202 4.202 9 O -0.104 6.104 10 C -0.075 4.075 11 C 0.071 3.929 12 C -0.569 4.569 13 H 0.067 0.933 14 C -0.183 4.183 15 N -0.561 5.561 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.200 1.200 19 H -0.190 1.190 20 H 0.059 0.941 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.142 0.858 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.117 4.465 12.312 13.267 hybrid contribution -0.618 0.212 -1.499 1.635 sum 1.499 4.676 10.813 11.876 Atomic orbital electron populations 1.21643 0.94133 1.02512 1.01174 1.19787 0.96572 0.87576 1.02741 1.21662 1.07308 1.00015 0.87268 1.70202 1.17527 1.03296 1.31648 1.27119 1.00742 0.96867 0.79492 1.19946 0.97504 0.87962 0.95717 1.21869 0.92527 1.02854 1.02809 1.21876 0.98772 0.96822 1.02762 1.84343 1.65938 1.35457 1.24638 1.24158 1.01081 0.82749 0.99473 1.17619 0.97194 0.96406 0.81699 1.21068 0.97407 1.41035 0.97371 0.93296 1.25783 1.01723 0.94408 0.96348 1.70026 1.36905 1.41994 1.07164 0.85525 0.79255 0.78859 0.77651 1.19729 1.19990 1.18980 0.94054 0.90052 0.93163 0.90937 0.89514 0.85785 0.87635 0.92687 0.93232 0.93177 0.87505 0.93341 0.97175 0.93674 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.89 71.98 0.71 -4.19 16 2 C -0.03 -1.09 6.27 29.84 0.19 -0.91 16 3 C -0.04 -1.95 6.36 41.26 0.26 -1.69 16 4 N -0.50 -20.64 11.29 -291.98 -3.30 -23.94 16 5 C 0.16 6.31 6.85 88.34 0.61 6.92 16 6 C 0.01 0.20 3.39 -11.54 -0.04 0.16 16 7 C -0.14 -3.04 9.17 71.98 0.66 -2.38 16 8 C -0.14 -3.27 9.18 71.98 0.66 -2.61 16 9 O -0.22 -9.90 10.78 -3.70 -0.04 -9.94 16 10 C -0.02 -1.08 6.58 24.79 0.16 -0.91 16 11 C 0.11 5.85 5.31 29.10 0.15 6.00 16 12 C -0.53 -30.22 8.93 25.60 0.23 -29.99 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.02 0.95 5.46 84.66 0.46 1.41 16 15 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 16 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H 0.04 1.72 7.98 -2.38 -0.02 1.70 16 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 2.80 7.16 -2.39 -0.02 2.78 16 24 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 2.48 7.16 -2.39 -0.02 2.47 16 34 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -65.82 291.51 4.09 -61.73 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.06 Total: 8.24 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 4.06 Total: -28.17 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -3.01 Total: -77.42 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.04 Total: -9.94 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.82 4.09 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.101 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds