Wall clock time and date at job start Mon Mar 30 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 C 1.50698 * 109.46960 * 119.99851 * 2 1 3 5 5 C 1.41379 * 126.58206 * 300.02913 * 4 2 1 6 6 C 1.34515 * 106.84356 * 179.97438 * 5 4 2 7 7 O 1.34302 * 108.41987 * 359.97438 * 6 5 4 8 8 C 1.34303 * 109.47456 * 359.77436 * 7 6 5 9 9 C 1.50701 * 125.78827 * 180.23708 * 8 7 6 10 10 H 1.09000 * 109.47155 * 180.16835 * 9 8 7 11 11 C 1.50700 * 109.47486 * 60.16517 * 9 8 7 12 12 H 1.07999 * 119.99648 * 354.55005 * 11 9 8 13 13 C 1.37877 * 120.00162 * 174.55246 * 11 9 8 14 14 N 1.31510 * 119.99903 * 350.60986 * 13 11 9 15 15 Si 1.86801 * 119.99763 * 170.61054 * 13 11 9 16 16 H 1.48506 * 109.47069 * 60.00164 * 15 13 11 17 17 H 1.48496 * 109.46842 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 300.00032 * 15 13 11 19 19 C 1.53002 * 109.47266 * 300.16364 * 9 8 7 20 20 N 1.46898 * 109.47314 * 296.77865 * 19 9 8 21 21 H 1.08996 * 109.46981 * 300.00276 * 1 2 3 22 22 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46708 * 60.00191 * 1 2 3 24 24 H 1.08996 * 109.46981 * 239.99724 * 2 1 3 25 25 H 1.08998 * 109.46630 * 300.00029 * 3 2 1 26 26 H 1.08996 * 109.46909 * 60.00043 * 3 2 1 27 27 H 1.08997 * 109.47046 * 179.97438 * 3 2 1 28 28 H 1.08007 * 126.58000 * 359.97438 * 5 4 2 29 29 H 1.08001 * 125.79013 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99887 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.46781 * 56.77299 * 19 9 8 32 32 H 1.08997 * 109.47315 * 176.77631 * 19 9 8 33 33 H 1.00898 * 111.00419 * 184.49964 * 20 19 9 34 34 H 1.00905 * 110.99835 * 308.45527 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7775 -0.3510 2.5739 6 6 2.4134 -1.2509 3.3454 7 8 3.0359 -2.1316 2.5450 8 6 2.8039 -1.8118 1.2614 9 6 3.3231 -2.5581 0.0596 10 1 2.9767 -2.0678 -0.8502 11 6 2.8147 -3.9764 0.0906 12 1 2.2528 -4.3301 0.9424 13 6 3.0669 -4.8225 -0.9684 14 7 3.5857 -4.3483 -2.0799 15 14 2.6715 -6.6425 -0.8244 16 1 1.2193 -6.8147 -0.5656 17 1 3.0329 -7.3292 -2.0905 18 1 3.4472 -7.2304 0.2971 19 6 4.8529 -2.5641 0.0847 20 7 5.3499 -1.1860 -0.0234 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1858 0.4856 2.9152 29 1 2.4213 -1.2636 4.4253 30 1 3.7635 -4.9436 -2.8248 31 1 5.1992 -3.0028 1.0205 32 1 5.2278 -3.1523 -0.7529 33 1 6.3570 -1.1683 -0.0829 34 1 4.9328 -0.7119 -0.8105 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261249023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:38 Heat of formation + Delta-G solvation = -10.333526 kcal Electronic energy + Delta-G solvation = -15843.085134 eV Core-core repulsion = 13355.690789 eV Total energy + Delta-G solvation = -2487.394345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61437 -35.68479 -34.94397 -32.27043 -30.83538 -29.92221 -26.76233 -26.60842 -23.88501 -22.05751 -21.51552 -19.57239 -18.36153 -16.60738 -16.11530 -14.89570 -14.71612 -14.54604 -14.15665 -13.64926 -13.16401 -12.77828 -12.62164 -12.56669 -12.05624 -11.76359 -11.69289 -11.29707 -10.98673 -10.79021 -10.67084 -10.48060 -10.30865 -10.00804 -9.69969 -9.42419 -8.73701 -8.50993 -7.68844 -7.23854 -6.16839 -4.19492 2.81724 3.27595 3.31660 3.35781 3.56591 4.10127 4.36419 5.14688 5.42174 5.48510 5.64739 5.78034 5.81536 5.92947 6.07235 6.18235 6.24263 6.27546 6.42749 6.57864 6.59523 6.76935 6.79596 6.82836 7.07403 7.14502 7.31184 7.48669 7.57474 7.80696 7.97378 8.18338 8.28882 8.39163 8.83104 9.44255 10.90843 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.009506 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.997580 B = 2944.820056 C = 2952.920355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.018 4.018 3 C -0.136 4.136 4 C -0.214 4.214 5 C -0.200 4.200 6 C -0.087 4.087 7 O -0.172 6.172 8 C 0.084 3.916 9 C 0.118 3.882 10 H 0.064 0.936 11 C -0.516 4.516 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.068 3.932 20 N -0.855 5.855 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.129 0.871 29 H 0.184 0.816 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.321 0.679 34 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 7.337 3.689 8.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 C -0.193 4.193 4 C -0.215 4.215 5 C -0.219 4.219 6 C -0.154 4.154 7 O -0.067 6.067 8 C 0.033 3.967 9 C 0.100 3.900 10 H 0.082 0.918 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.062 4.062 20 N -0.382 5.382 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.201 0.799 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.667 7.128 4.326 8.503 hybrid contribution 0.036 -1.125 -0.720 1.336 sum -1.631 6.003 3.606 7.190 Atomic orbital electron populations 1.21778 0.95743 1.01648 1.00336 1.19366 0.94495 0.94666 0.95140 1.21766 1.01329 0.95917 1.00294 1.19805 1.07427 0.99908 0.94357 1.21380 1.05376 1.01919 0.93271 1.23557 1.02294 0.93557 0.96000 1.84032 1.58855 1.46903 1.16934 1.23099 0.96139 0.94309 0.83178 1.17639 0.91080 0.94401 0.86918 0.91839 1.20966 1.35459 0.94934 1.04111 0.92125 1.24937 0.94868 0.99024 0.94684 1.69923 1.43990 1.35392 1.03318 0.86601 0.79026 0.84793 0.77395 1.20068 1.21195 1.20014 1.21958 0.97129 0.86962 1.00122 1.59000 1.09909 1.19286 1.49999 0.93439 0.92616 0.93413 0.90412 0.93537 0.93471 0.92493 0.85281 0.79880 0.92627 0.93069 0.93256 0.86856 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.10 37.16 0.34 -1.88 16 2 C -0.02 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -2.08 9.10 37.16 0.34 -1.74 16 4 C -0.21 -4.37 4.83 -104.75 -0.51 -4.88 16 5 C -0.20 -3.69 10.46 -39.70 -0.42 -4.10 16 6 C -0.09 -1.62 12.09 29.42 0.36 -1.26 16 7 O -0.17 -3.90 10.65 5.71 0.06 -3.84 16 8 C 0.08 1.94 5.45 -35.62 -0.19 1.75 16 9 C 0.12 2.93 2.11 -92.92 -0.20 2.73 16 10 H 0.06 1.66 6.32 -51.93 -0.33 1.34 16 11 C -0.52 -14.08 8.47 -34.44 -0.29 -14.38 16 12 H 0.06 1.70 7.76 -52.49 -0.41 1.29 16 13 C 0.07 1.81 5.18 -17.82 -0.09 1.72 16 14 N -0.89 -24.36 12.15 55.43 0.67 -23.69 16 15 Si 0.89 21.00 29.55 -169.99 -5.02 15.97 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.07 1.59 6.07 -3.82 -0.02 1.57 16 20 N -0.85 -16.73 9.32 -10.37 -0.10 -16.82 16 21 H 0.05 0.70 8.06 -51.93 -0.42 0.29 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 1.54 6.39 -51.93 -0.33 1.21 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 29 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.24 6.83 -51.93 -0.35 0.88 16 33 H 0.32 5.48 9.08 -39.29 -0.36 5.13 16 34 H 0.33 6.25 8.93 -39.29 -0.35 5.90 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -28.37 285.65 -6.13 -34.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.06 Total: 10.67 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.98 Total: -21.10 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.58 Total: -40.51 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.06 Total: -3.84 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.37 -6.13 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.167 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds