Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 C 1.50698 * 109.46960 * 119.99851 * 2 1 3 5 5 C 1.41379 * 126.58206 * 300.02913 * 4 2 1 6 6 C 1.34515 * 106.84356 * 179.97438 * 5 4 2 7 7 O 1.34302 * 108.41987 * 359.97438 * 6 5 4 8 8 C 1.34303 * 109.47456 * 359.77436 * 7 6 5 9 9 C 1.50701 * 125.78827 * 180.23708 * 8 7 6 10 10 H 1.09000 * 109.47155 * 180.16835 * 9 8 7 11 11 C 1.50700 * 109.47486 * 60.16517 * 9 8 7 12 12 H 1.07999 * 119.99648 * 354.55005 * 11 9 8 13 13 C 1.37877 * 120.00162 * 174.55246 * 11 9 8 14 14 N 1.31510 * 119.99903 * 350.60986 * 13 11 9 15 15 Si 1.86801 * 119.99763 * 170.61054 * 13 11 9 16 16 H 1.48506 * 109.47069 * 60.00164 * 15 13 11 17 17 H 1.48496 * 109.46842 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 300.00032 * 15 13 11 19 19 C 1.53002 * 109.47266 * 300.16364 * 9 8 7 20 20 N 1.46898 * 109.47314 * 296.77865 * 19 9 8 21 21 H 1.08996 * 109.46981 * 300.00276 * 1 2 3 22 22 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46708 * 60.00191 * 1 2 3 24 24 H 1.08996 * 109.46981 * 239.99724 * 2 1 3 25 25 H 1.08998 * 109.46630 * 300.00029 * 3 2 1 26 26 H 1.08996 * 109.46909 * 60.00043 * 3 2 1 27 27 H 1.08997 * 109.47046 * 179.97438 * 3 2 1 28 28 H 1.08007 * 126.58000 * 359.97438 * 5 4 2 29 29 H 1.08001 * 125.79013 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99887 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.46781 * 56.77299 * 19 9 8 32 32 H 1.08997 * 109.47315 * 176.77631 * 19 9 8 33 33 H 1.00898 * 111.00419 * 184.49964 * 20 19 9 34 34 H 1.00905 * 110.99835 * 308.45527 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7775 -0.3510 2.5739 6 6 2.4134 -1.2509 3.3454 7 8 3.0359 -2.1316 2.5450 8 6 2.8039 -1.8118 1.2614 9 6 3.3231 -2.5581 0.0596 10 1 2.9767 -2.0678 -0.8502 11 6 2.8147 -3.9764 0.0906 12 1 2.2528 -4.3301 0.9424 13 6 3.0669 -4.8225 -0.9684 14 7 3.5857 -4.3483 -2.0799 15 14 2.6715 -6.6425 -0.8244 16 1 1.2193 -6.8147 -0.5656 17 1 3.0329 -7.3292 -2.0905 18 1 3.4472 -7.2304 0.2971 19 6 4.8529 -2.5641 0.0847 20 7 5.3499 -1.1860 -0.0234 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.1858 0.4856 2.9152 29 1 2.4213 -1.2636 4.4253 30 1 3.7635 -4.9436 -2.8248 31 1 5.1992 -3.0028 1.0205 32 1 5.2278 -3.1523 -0.7529 33 1 6.3570 -1.1683 -0.0829 34 1 4.9328 -0.7119 -0.8105 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -28.406777 kcal Electronic energy + Delta-G solvation = -15843.868849 eV Core-core repulsion = 13355.690789 eV Total energy + Delta-G solvation = -2488.178060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.19964 -37.34085 -36.58431 -34.23356 -32.31803 -31.67843 -28.49675 -27.85623 -25.85070 -23.51900 -23.25600 -21.16544 -19.93204 -18.60573 -17.71737 -16.70542 -16.48613 -16.18581 -15.66998 -15.38303 -14.58942 -14.53721 -14.14547 -13.92885 -13.90462 -13.29010 -13.08956 -12.93753 -12.88470 -12.55259 -12.10935 -12.00568 -11.98710 -11.69541 -11.44620 -11.31366 -10.56856 -10.22930 -9.41102 -8.85562 -8.21541 -6.32494 1.24614 1.38868 1.40506 1.48678 2.02270 2.39641 2.57316 3.07027 3.95721 4.04634 4.13903 4.27444 4.48349 4.55236 4.65525 4.75864 4.85056 4.90155 4.94431 5.03579 5.06292 5.23333 5.31744 5.36970 5.51510 5.54594 5.65719 5.70316 5.72806 5.96397 6.15438 6.39833 6.64925 6.71372 6.82758 7.33936 8.83670 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.009506 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.997580 B = 2944.820056 C = 2952.920355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.024 4.024 3 C -0.127 4.127 4 C -0.206 4.206 5 C -0.205 4.205 6 C -0.081 4.081 7 O -0.200 6.200 8 C 0.035 3.965 9 C 0.124 3.876 10 H 0.041 0.959 11 C -0.538 4.538 12 H 0.044 0.956 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.951 3.049 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.272 1.272 19 C 0.085 3.915 20 N -0.844 5.844 21 H 0.065 0.935 22 H 0.032 0.968 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.163 0.837 29 H 0.228 0.772 30 H 0.266 0.734 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.338 0.662 34 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 8.546 4.658 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.043 4.043 3 C -0.184 4.184 4 C -0.207 4.207 5 C -0.224 4.224 6 C -0.147 4.147 7 O -0.097 6.097 8 C -0.015 4.015 9 C 0.105 3.895 10 H 0.059 0.941 11 C -0.577 4.577 12 H 0.062 0.938 13 C -0.173 4.173 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.197 1.197 19 C -0.046 4.046 20 N -0.373 5.373 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.150 0.850 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.404 8.353 5.289 10.175 hybrid contribution 0.248 -1.431 -0.967 1.745 sum -2.156 6.922 4.322 8.441 Atomic orbital electron populations 1.21728 0.94085 1.00782 1.02338 1.19462 0.95883 0.95939 0.92986 1.21683 1.00596 0.94018 1.02101 1.20237 1.05450 0.98693 0.96318 1.21736 1.05753 1.02953 0.91973 1.24524 1.00419 0.92125 0.97650 1.83981 1.60049 1.48481 1.17152 1.22815 0.99347 0.96201 0.83126 1.17327 0.91632 0.93139 0.87365 0.94146 1.21186 1.35916 0.96802 1.03762 0.93810 1.25610 0.94722 1.02689 0.94305 1.70007 1.44424 1.36568 1.03684 0.85715 0.78807 0.80213 0.77652 1.19799 1.20197 1.19745 1.21600 0.96538 0.88301 0.98159 1.58860 1.11158 1.17002 1.50265 0.91618 0.94900 0.91222 0.93286 0.91394 0.91963 0.93588 0.81919 0.75570 0.92452 0.94497 0.95698 0.85004 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.10 71.98 0.65 -3.37 16 2 C -0.02 -0.85 3.25 -11.54 -0.04 -0.89 16 3 C -0.13 -3.58 9.10 71.98 0.65 -2.93 16 4 C -0.21 -8.27 4.83 -19.94 -0.10 -8.36 16 5 C -0.21 -7.02 10.46 22.19 0.23 -6.78 16 6 C -0.08 -2.83 12.09 66.97 0.81 -2.02 16 7 O -0.20 -9.06 10.65 -2.48 -0.03 -9.09 16 8 C 0.04 1.66 5.45 24.83 0.14 1.80 16 9 C 0.12 6.38 2.11 -12.29 -0.03 6.36 16 10 H 0.04 2.24 6.32 -2.39 -0.02 2.22 16 11 C -0.54 -30.45 8.47 25.60 0.22 -30.23 16 12 H 0.04 2.55 7.76 -2.91 -0.02 2.53 16 13 C 0.03 1.50 5.18 84.66 0.44 1.94 16 14 N -0.91 -51.01 12.15 21.45 0.26 -50.75 16 15 Si 0.95 43.60 29.55 68.60 2.03 45.63 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 C 0.08 4.09 6.07 86.30 0.52 4.61 16 20 N -0.84 -33.31 9.32 -186.72 -1.74 -35.05 16 21 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.99 6.39 -2.39 -0.02 1.98 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.57 8.06 -2.39 -0.02 1.55 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.23 5.53 8.06 -2.91 -0.02 5.51 16 30 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.02 1.30 6.83 -2.39 -0.02 1.28 16 33 H 0.34 11.42 9.08 -89.70 -0.81 10.61 16 34 H 0.34 12.85 8.93 -89.69 -0.80 12.04 16 Total: -1.00 -62.44 285.65 3.51 -58.93 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.52 Total: 30.21 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.51 Total: -39.88 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.48 Total: -85.81 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.03 Total: -9.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.44 3.51 -58.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.524 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds