Wall clock time and date at job start Mon Mar 30 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 C 1.50694 * 109.47430 * 239.99340 * 2 1 3 5 5 C 1.41388 * 126.57466 * 59.69388 * 4 2 1 6 6 C 1.34521 * 106.83760 * 179.83379 * 5 4 2 7 7 O 1.34303 * 108.41866 * 0.42851 * 6 5 4 8 8 C 1.34306 * 109.47862 * 359.72143 * 7 6 5 9 9 C 1.50695 * 125.78815 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47283 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47220 * 299.95652 * 9 8 7 12 12 H 1.08001 * 120.00059 * 5.44922 * 11 9 8 13 13 C 1.37879 * 120.00264 * 185.44282 * 11 9 8 14 14 N 1.31521 * 119.99768 * 9.39141 * 13 11 9 15 15 Si 1.86793 * 120.00323 * 189.38995 * 13 11 9 16 16 H 1.48499 * 109.47236 * 84.99472 * 15 13 11 17 17 H 1.48496 * 109.47356 * 204.99799 * 15 13 11 18 18 H 1.48503 * 109.46913 * 324.99532 * 15 13 11 19 19 C 1.53001 * 109.47421 * 59.95847 * 9 8 7 20 20 N 1.46904 * 109.46861 * 63.22068 * 19 9 8 21 21 H 1.09007 * 109.47608 * 300.00197 * 1 2 3 22 22 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46937 * 60.00176 * 1 2 3 24 24 H 1.09007 * 109.46636 * 119.99368 * 2 1 3 25 25 H 1.09006 * 109.47508 * 59.99432 * 3 2 1 26 26 H 1.09001 * 109.47280 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47226 * 299.99634 * 3 2 1 28 28 H 1.07996 * 126.57874 * 359.97438 * 5 4 2 29 29 H 1.08000 * 125.78641 * 180.18542 * 6 5 4 30 30 H 0.96998 * 120.00062 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47463 * 183.21718 * 19 9 8 32 32 H 1.08997 * 109.46916 * 303.22187 * 19 9 8 33 33 H 1.00897 * 111.00550 * 56.04198 * 20 19 9 34 34 H 1.00902 * 110.99980 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 1.7730 -0.3544 -2.5738 6 6 2.4143 -1.2506 -3.3452 7 8 3.0369 -2.1311 -2.5447 8 6 2.8087 -1.8085 -1.2611 9 6 3.3340 -2.5504 -0.0592 10 1 2.9876 -2.0600 0.8505 11 6 2.8311 -3.9708 -0.0864 12 1 2.2684 -4.3283 -0.9361 13 6 3.0893 -4.8140 0.9735 14 7 3.6092 -4.3356 2.0829 15 14 2.7008 -6.6358 0.8339 16 1 3.8378 -7.3360 0.1842 17 1 2.4813 -7.2004 2.1897 18 1 1.4744 -6.8191 0.0168 19 6 4.8637 -2.5504 -0.0881 20 7 5.3554 -1.1700 0.0161 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.8932 -0.5138 0.8901 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.1766 0.4788 -2.9151 29 1 2.4234 -1.2625 -4.4251 30 1 3.7905 -4.9287 2.8287 31 1 5.2430 -3.1354 0.7497 32 1 5.2094 -2.9895 -1.0240 33 1 4.9954 -0.7195 0.8441 34 1 6.3639 -1.1431 -0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261249024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:40 Heat of formation + Delta-G solvation = -10.317860 kcal Electronic energy + Delta-G solvation = -15841.125417 eV Core-core repulsion = 13353.731752 eV Total energy + Delta-G solvation = -2487.393666 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60596 -35.67086 -34.93616 -32.26892 -30.82824 -29.92697 -26.75746 -26.59983 -23.88822 -22.04937 -21.50182 -19.56528 -18.35346 -16.59542 -16.11438 -14.88588 -14.71016 -14.58351 -14.15397 -13.63204 -13.16464 -12.74742 -12.61605 -12.57429 -12.04944 -11.75659 -11.69793 -11.30213 -10.99804 -10.76688 -10.66146 -10.46458 -10.30162 -10.00538 -9.69356 -9.40211 -8.72980 -8.50653 -7.69849 -7.22790 -6.16685 -4.19210 2.82396 3.26323 3.32548 3.36547 3.57527 4.10714 4.36644 5.14691 5.43046 5.49354 5.64726 5.78497 5.82482 5.93604 6.07870 6.19085 6.24818 6.28201 6.43741 6.58372 6.59412 6.78194 6.80259 6.83775 7.08171 7.15342 7.31493 7.49176 7.58050 7.81036 7.97677 8.18561 8.29230 8.39696 8.83750 9.44535 10.91069 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.009505 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.475869 B = 2945.198919 C = 2952.957419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.018 4.018 3 C -0.136 4.136 4 C -0.214 4.214 5 C -0.200 4.200 6 C -0.087 4.087 7 O -0.172 6.172 8 C 0.085 3.915 9 C 0.119 3.881 10 H 0.064 0.936 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.895 3.105 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.069 3.931 20 N -0.855 5.855 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.129 0.871 29 H 0.184 0.816 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.331 0.669 34 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 7.314 -3.749 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.193 4.193 4 C -0.215 4.215 5 C -0.219 4.219 6 C -0.155 4.155 7 O -0.068 6.068 8 C 0.034 3.966 9 C 0.100 3.900 10 H 0.082 0.918 11 C -0.554 4.554 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.062 4.062 20 N -0.382 5.382 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.147 0.853 29 H 0.201 0.799 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.142 0.858 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.665 7.120 -4.357 8.512 hybrid contribution 0.127 -1.146 0.686 1.341 sum -1.539 5.974 -3.672 7.179 Atomic orbital electron populations 1.21780 0.95769 1.01633 1.00326 1.19360 0.94454 0.94669 0.95159 1.21765 1.01355 0.95911 1.00257 1.19800 1.07283 1.00044 0.94336 1.21383 1.05256 1.02019 0.93287 1.23553 1.02275 0.93640 0.95987 1.84030 1.59049 1.46754 1.16951 1.23095 0.96121 0.94274 0.83144 1.17625 0.91033 0.94383 0.86933 0.91819 1.21011 1.35373 0.94853 1.04180 0.92084 1.24943 0.94897 0.99021 0.94694 1.69934 1.44015 1.35297 1.03379 0.86551 0.78994 0.84943 0.77304 1.20401 1.21193 1.19758 1.21955 0.97245 0.86856 1.00101 1.58977 1.12384 1.20332 1.46486 0.93420 0.92628 0.93449 0.90404 0.93568 0.92469 0.93494 0.85292 0.79894 0.92682 0.93270 0.93093 0.85803 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.09 37.16 0.34 -1.89 16 2 C -0.02 -0.33 3.25 -91.78 -0.30 -0.62 16 3 C -0.14 -2.09 9.10 37.16 0.34 -1.75 16 4 C -0.21 -4.38 4.83 -104.75 -0.51 -4.88 16 5 C -0.20 -3.70 10.46 -39.70 -0.42 -4.11 16 6 C -0.09 -1.63 12.09 29.42 0.36 -1.27 16 7 O -0.17 -3.91 10.65 5.70 0.06 -3.85 16 8 C 0.08 1.96 5.45 -35.63 -0.19 1.77 16 9 C 0.12 2.95 2.15 -92.93 -0.20 2.75 16 10 H 0.06 1.67 6.32 -51.93 -0.33 1.34 16 11 C -0.52 -14.07 8.47 -34.44 -0.29 -14.37 16 12 H 0.06 1.71 7.76 -52.49 -0.41 1.31 16 13 C 0.07 1.80 5.18 -17.82 -0.09 1.71 16 14 N -0.89 -24.37 12.15 55.43 0.67 -23.70 16 15 Si 0.89 21.01 29.55 -169.99 -5.02 15.99 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.07 1.59 6.05 -3.82 -0.02 1.57 16 20 N -0.85 -16.67 9.29 -10.37 -0.10 -16.77 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.70 8.05 -51.93 -0.42 0.29 16 24 H 0.08 1.55 6.39 -51.93 -0.33 1.22 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.05 1.23 6.83 -51.93 -0.35 0.88 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.33 6.22 8.99 -39.29 -0.35 5.86 16 34 H 0.32 5.46 9.08 -39.29 -0.36 5.10 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -28.41 285.71 -6.13 -34.54 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.06 Total: 10.58 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.99 Total: -21.10 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.58 Total: -40.47 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.06 Total: -3.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.41 -6.13 -34.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.220 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds