Wall clock time and date at job start Mon Mar 30 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 C 1.50694 * 109.47430 * 239.99340 * 2 1 3 5 5 C 1.41388 * 126.57466 * 59.69388 * 4 2 1 6 6 C 1.34521 * 106.83760 * 179.83379 * 5 4 2 7 7 O 1.34303 * 108.41866 * 0.42851 * 6 5 4 8 8 C 1.34306 * 109.47862 * 359.72143 * 7 6 5 9 9 C 1.50695 * 125.78815 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47283 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47220 * 299.95652 * 9 8 7 12 12 H 1.08001 * 120.00059 * 5.44922 * 11 9 8 13 13 C 1.37879 * 120.00264 * 185.44282 * 11 9 8 14 14 N 1.31521 * 119.99768 * 9.39141 * 13 11 9 15 15 Si 1.86793 * 120.00323 * 189.38995 * 13 11 9 16 16 H 1.48499 * 109.47236 * 84.99472 * 15 13 11 17 17 H 1.48496 * 109.47356 * 204.99799 * 15 13 11 18 18 H 1.48503 * 109.46913 * 324.99532 * 15 13 11 19 19 C 1.53001 * 109.47421 * 59.95847 * 9 8 7 20 20 N 1.46904 * 109.46861 * 63.22068 * 19 9 8 21 21 H 1.09007 * 109.47608 * 300.00197 * 1 2 3 22 22 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46937 * 60.00176 * 1 2 3 24 24 H 1.09007 * 109.46636 * 119.99368 * 2 1 3 25 25 H 1.09006 * 109.47508 * 59.99432 * 3 2 1 26 26 H 1.09001 * 109.47280 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47226 * 299.99634 * 3 2 1 28 28 H 1.07996 * 126.57874 * 359.97438 * 5 4 2 29 29 H 1.08000 * 125.78641 * 180.18542 * 6 5 4 30 30 H 0.96998 * 120.00062 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47463 * 183.21718 * 19 9 8 32 32 H 1.08997 * 109.46916 * 303.22187 * 19 9 8 33 33 H 1.00897 * 111.00550 * 56.04198 * 20 19 9 34 34 H 1.00902 * 110.99980 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2303 5 6 1.7730 -0.3544 -2.5738 6 6 2.4143 -1.2506 -3.3452 7 8 3.0369 -2.1311 -2.5447 8 6 2.8087 -1.8085 -1.2611 9 6 3.3340 -2.5504 -0.0592 10 1 2.9876 -2.0600 0.8505 11 6 2.8311 -3.9708 -0.0864 12 1 2.2684 -4.3283 -0.9361 13 6 3.0893 -4.8140 0.9735 14 7 3.6092 -4.3356 2.0829 15 14 2.7008 -6.6358 0.8339 16 1 3.8378 -7.3360 0.1842 17 1 2.4813 -7.2004 2.1897 18 1 1.4744 -6.8191 0.0168 19 6 4.8637 -2.5504 -0.0881 20 7 5.3554 -1.1700 0.0161 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.8932 -0.5138 0.8901 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.1766 0.4788 -2.9151 29 1 2.4234 -1.2625 -4.4251 30 1 3.7905 -4.9287 2.8287 31 1 5.2430 -3.1354 0.7497 32 1 5.2094 -2.9895 -1.0240 33 1 4.9954 -0.7195 0.8441 34 1 6.3639 -1.1431 -0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:40 Heat of formation + Delta-G solvation = -28.421896 kcal Electronic energy + Delta-G solvation = -15841.910467 eV Core-core repulsion = 13353.731752 eV Total energy + Delta-G solvation = -2488.178716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.19361 -37.32732 -36.58047 -34.23054 -32.31418 -31.68460 -28.49328 -27.85346 -25.85405 -23.51466 -23.24180 -21.16137 -19.92777 -18.59625 -17.72069 -16.69137 -16.48652 -16.22436 -15.66909 -15.36572 -14.58773 -14.51703 -14.14205 -13.93830 -13.90242 -13.30200 -13.08024 -12.93610 -12.88750 -12.53640 -12.09637 -12.00948 -11.98217 -11.70248 -11.42627 -11.30819 -10.56507 -10.22527 -9.41272 -8.84843 -8.21512 -6.32337 1.25104 1.38159 1.40254 1.49441 2.02795 2.39717 2.57683 3.06950 3.96038 4.04957 4.14292 4.27735 4.48686 4.55497 4.65293 4.76398 4.86489 4.90215 4.94616 5.03908 5.06414 5.23583 5.32140 5.37287 5.51889 5.54999 5.66140 5.70645 5.73309 5.96783 6.15959 6.40352 6.65169 6.71994 6.83394 7.34097 8.83894 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.009505 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.475869 B = 2945.198919 C = 2952.957419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.024 4.024 3 C -0.126 4.126 4 C -0.206 4.206 5 C -0.205 4.205 6 C -0.081 4.081 7 O -0.200 6.200 8 C 0.036 3.964 9 C 0.125 3.875 10 H 0.040 0.960 11 C -0.538 4.538 12 H 0.043 0.957 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.952 3.048 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.273 1.273 19 C 0.085 3.915 20 N -0.844 5.844 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.163 0.837 29 H 0.228 0.772 30 H 0.266 0.734 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.336 0.664 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 8.509 -4.732 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.042 4.042 3 C -0.184 4.184 4 C -0.207 4.207 5 C -0.224 4.224 6 C -0.147 4.147 7 O -0.097 6.097 8 C -0.014 4.014 9 C 0.106 3.894 10 H 0.058 0.942 11 C -0.576 4.576 12 H 0.062 0.938 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.777 3.223 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.046 4.046 20 N -0.373 5.373 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.148 0.852 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.379 8.330 -5.334 10.174 hybrid contribution 0.331 -1.448 0.938 1.756 sum -2.048 6.883 -4.396 8.420 Atomic orbital electron populations 1.21729 0.94086 1.00784 1.02331 1.19454 0.95863 0.95928 0.93000 1.21680 1.00592 0.94029 1.02068 1.20231 1.05338 0.98841 0.96295 1.21738 1.05656 1.03053 0.91984 1.24521 1.00389 0.92192 0.97639 1.83979 1.60231 1.48323 1.17155 1.22812 0.99304 0.96166 0.83104 1.17313 0.91642 0.93097 0.87350 0.94183 1.21216 1.35830 0.96716 1.03818 0.93837 1.25614 0.94741 1.02692 0.94312 1.70016 1.44435 1.36499 1.03750 0.85664 0.78767 0.80342 0.77545 1.19809 1.20263 1.19786 1.21596 0.96600 0.88216 0.98169 1.58835 1.13674 1.18003 1.46774 0.91230 0.94888 0.91620 0.93323 0.91429 0.93606 0.91973 0.81938 0.75570 0.92469 0.95734 0.94439 0.85187 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.09 71.98 0.65 -3.39 16 2 C -0.02 -0.84 3.25 -11.54 -0.04 -0.88 16 3 C -0.13 -3.60 9.10 71.98 0.65 -2.95 16 4 C -0.21 -8.30 4.83 -19.94 -0.10 -8.39 16 5 C -0.21 -7.04 10.46 22.19 0.23 -6.81 16 6 C -0.08 -2.84 12.09 66.97 0.81 -2.03 16 7 O -0.20 -9.07 10.65 -2.52 -0.03 -9.10 16 8 C 0.04 1.71 5.45 24.83 0.14 1.85 16 9 C 0.12 6.42 2.15 -12.29 -0.03 6.40 16 10 H 0.04 2.22 6.32 -2.39 -0.02 2.21 16 11 C -0.54 -30.42 8.47 25.60 0.22 -30.21 16 12 H 0.04 2.54 7.76 -2.91 -0.02 2.52 16 13 C 0.03 1.48 5.18 84.65 0.44 1.92 16 14 N -0.91 -51.04 12.15 21.45 0.26 -50.78 16 15 Si 0.95 43.66 29.55 68.60 2.03 45.69 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.09 4.09 6.05 86.30 0.52 4.61 16 20 N -0.84 -33.21 9.29 -186.71 -1.73 -34.94 16 21 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.75 8.05 -2.38 -0.02 1.73 16 24 H 0.05 1.99 6.39 -2.38 -0.02 1.97 16 25 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.58 8.06 -2.39 -0.02 1.56 16 28 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.23 5.53 8.06 -2.91 -0.02 5.51 16 30 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.02 1.28 6.83 -2.39 -0.02 1.26 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.34 12.79 8.99 -89.70 -0.81 11.98 16 34 H 0.34 11.36 9.08 -89.69 -0.81 10.55 16 Total: -1.00 -62.53 285.71 3.51 -59.02 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.52 Total: 29.99 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.50 Total: -39.88 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.47 Total: -85.72 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.03 Total: -9.10 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -62.53 3.51 -59.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.600 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds