Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48508 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47480 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47184 * 60.00379 * 3 2 1 7 7 C 1.37881 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99847 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.28670 * 301.97267 * 9 7 2 11 11 N 1.46763 * 110.24933 * 63.95350 * 9 7 2 12 12 C 1.34418 * 111.30364 * 136.01592 * 11 9 7 13 13 O 1.21275 * 124.94009 * 179.55860 * 12 11 9 14 14 C 1.51278 * 110.11702 * 359.58767 * 12 11 9 15 15 C 1.54486 * 110.24231 * 179.97438 * 9 7 2 16 16 H 1.08992 * 111.00198 * 333.71884 * 15 9 7 17 17 C 1.53005 * 110.96479 * 97.46710 * 15 9 7 18 18 C 1.54893 * 110.59682 * 288.66880 * 17 15 9 19 19 C 1.54887 * 102.74533 * 203.32744 * 18 17 15 20 20 C 1.54266 * 104.19888 * 37.94403 * 19 18 17 21 21 C 1.53872 * 106.59640 * 336.38805 * 20 19 18 22 22 H 0.97003 * 120.00187 * 359.97438 * 1 2 3 23 23 H 0.96999 * 124.34441 * 316.03266 * 11 9 7 24 24 H 1.08997 * 110.49250 * 225.07419 * 14 12 11 25 25 H 1.09004 * 110.48337 * 102.42462 * 14 12 11 26 26 H 1.09001 * 110.43639 * 51.29128 * 17 15 9 27 27 H 1.09001 * 110.75228 * 85.01480 * 18 17 15 28 28 H 1.09000 * 110.75571 * 321.64113 * 18 17 15 29 29 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 30 30 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 31 31 H 1.09003 * 110.03179 * 95.67576 * 20 19 18 32 32 H 1.09003 * 110.02980 * 217.05505 * 20 19 18 33 33 H 1.09002 * 110.03208 * 119.28196 * 21 20 19 34 34 H 1.09000 * 110.03462 * 240.66592 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5929 -2.5563 0.8652 11 7 0.4739 -2.6359 -1.2392 12 6 0.5879 -3.8726 -1.7533 13 8 0.0429 -4.2567 -2.7663 14 6 1.4945 -4.7159 -0.8840 15 6 2.2390 -3.6868 -0.0028 16 1 3.1902 -3.4032 -0.4530 17 6 2.4464 -4.2276 1.4134 18 6 3.2735 -3.2302 2.2620 19 6 3.8831 -4.1381 3.3588 20 6 4.2240 -5.4483 2.6191 21 6 3.3105 -5.5052 1.3822 22 1 -0.4850 0.8401 0.0004 23 1 -0.0539 -1.9250 -1.6353 24 1 2.2011 -5.2739 -1.4983 25 1 0.9068 -5.3941 -0.2653 26 1 1.4861 -4.4281 1.8886 27 1 2.6281 -2.4709 2.7037 28 1 4.0581 -2.7700 1.6613 29 1 3.1549 -4.3241 4.1483 30 1 4.7858 -3.6861 3.7700 31 1 5.2696 -5.4420 2.3112 32 1 4.0309 -6.3037 3.2665 33 1 3.9128 -5.5264 0.4739 34 1 2.6739 -6.3887 1.4285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -70.945285 kcal Electronic energy + Delta-G solvation = -15819.834514 eV Core-core repulsion = 13329.811846 eV Total energy + Delta-G solvation = -2490.022668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47640 -37.54907 -35.27274 -32.58115 -30.96013 -28.62406 -27.60128 -26.81238 -23.57237 -20.67693 -20.20669 -19.24830 -19.02022 -16.99654 -15.67102 -15.55660 -15.06887 -14.58339 -13.98162 -13.69785 -13.03254 -12.98245 -12.56840 -12.37704 -12.02086 -11.97731 -11.08074 -10.99789 -10.89336 -10.70123 -10.54321 -10.48729 -10.32013 -10.19487 -9.92900 -9.89595 -9.26700 -8.93498 -8.62640 -7.61879 -6.28150 -4.37798 3.17031 3.27154 3.29797 3.65674 4.24727 4.67119 4.92813 5.00895 5.04524 5.17972 5.53150 5.55010 5.61000 5.80192 5.94876 5.97136 6.01043 6.06563 6.14206 6.21762 6.27996 6.36130 6.45561 6.56923 6.63046 6.71459 6.85519 6.97820 7.38345 7.68001 7.89753 8.18633 8.42864 8.77888 9.32605 9.50496 10.79132 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.011759 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.228205 B = 2380.511851 C = 3542.644368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.255 3.745 10 H 0.044 0.956 11 N -0.689 5.689 12 C 0.497 3.503 13 O -0.588 6.588 14 C -0.151 4.151 15 C -0.086 4.086 16 H 0.080 0.920 17 C -0.072 4.072 18 C -0.108 4.108 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.121 4.121 22 H 0.266 0.734 23 H 0.409 0.591 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -6.549 6.013 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.154 3.846 10 H 0.061 0.939 11 N -0.340 5.340 12 C 0.282 3.718 13 O -0.472 6.472 14 C -0.191 4.191 15 C -0.105 4.105 16 H 0.099 0.901 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.166 4.166 20 C -0.161 4.161 21 C -0.158 4.158 22 H 0.076 0.924 23 H 0.248 0.752 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.204 -6.691 5.595 10.703 hybrid contribution 0.173 1.296 -0.126 1.313 sum 6.377 -5.395 5.468 9.984 Atomic orbital electron populations 1.69894 1.06029 1.27407 1.49153 1.25112 0.94925 0.99676 0.93733 0.86465 0.80232 0.83200 0.77732 1.19500 1.20922 1.20812 1.21356 0.93357 0.89773 1.51707 0.91455 1.19414 0.88621 0.92770 0.83814 0.93851 1.47104 1.48120 1.11589 1.27192 1.20946 0.81827 0.84324 0.84707 1.90608 1.52950 1.76846 1.26785 1.22356 0.99157 0.98642 0.98945 1.22298 0.99543 0.94907 0.93793 0.90134 1.21867 0.98295 0.93996 0.94963 1.22454 0.99212 0.97048 0.95882 1.22412 1.00122 0.95824 0.98251 1.22123 0.99328 0.97658 0.96976 1.22221 0.97848 0.97968 0.97804 0.92401 0.75193 0.89960 0.89365 0.91185 0.90770 0.91255 0.92189 0.92353 0.92413 0.92663 0.91887 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 12.38 55.43 0.69 -22.72 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -12.74 8.34 -34.44 -0.29 -13.03 16 8 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.26 5.75 2.68 -68.16 -0.18 5.56 16 10 H 0.04 1.06 7.83 -51.93 -0.41 0.65 16 11 N -0.69 -16.34 5.69 -53.89 -0.31 -16.65 16 12 C 0.50 11.35 8.43 -10.86 -0.09 11.26 16 13 O -0.59 -15.20 18.03 5.56 0.10 -15.10 16 14 C -0.15 -2.74 5.88 -26.76 -0.16 -2.89 16 15 C -0.09 -1.58 2.00 -89.00 -0.18 -1.76 16 16 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 17 C -0.07 -1.12 2.20 -88.96 -0.20 -1.32 16 18 C -0.11 -1.67 5.73 -24.74 -0.14 -1.81 16 19 C -0.13 -1.62 6.83 -25.07 -0.17 -1.79 16 20 C -0.12 -1.45 6.80 -25.61 -0.17 -1.62 16 21 C -0.12 -1.57 5.83 -25.61 -0.15 -1.72 16 22 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.41 10.34 8.13 -40.82 -0.33 10.00 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16 26 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 275.53 15.07 4.15 4.15 Total: -1.00 -27.56 275.53 -7.50 -35.06 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.29 Total: 7.91 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.83 Total: -7.46 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.38 Total: -39.37 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.10 Total: -15.10 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.56 -7.50 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.886 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds