Wall clock time and date at job start Mon Mar 30 2020 02:45:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86798 * 119.99737 * 2 1
4 4 H 1.48508 * 109.46872 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47480 * 299.99934 * 3 2 1
6 6 H 1.48502 * 109.47184 * 60.00379 * 3 2 1
7 7 C 1.37881 * 120.00040 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99847 * 0.02562 * 7 2 1
10 10 H 1.08991 * 110.28670 * 301.97267 * 9 7 2
11 11 N 1.46763 * 110.24933 * 63.95350 * 9 7 2
12 12 C 1.34418 * 111.30364 * 136.01592 * 11 9 7
13 13 O 1.21275 * 124.94009 * 179.55860 * 12 11 9
14 14 C 1.51278 * 110.11702 * 359.58767 * 12 11 9
15 15 C 1.54486 * 110.24231 * 179.97438 * 9 7 2
16 16 H 1.08992 * 111.00198 * 333.71884 * 15 9 7
17 17 C 1.53005 * 110.96479 * 97.46710 * 15 9 7
18 18 C 1.54893 * 110.59682 * 288.66880 * 17 15 9
19 19 C 1.54887 * 102.74533 * 203.32744 * 18 17 15
20 20 C 1.54266 * 104.19888 * 37.94403 * 19 18 17
21 21 C 1.53872 * 106.59640 * 336.38805 * 20 19 18
22 22 H 0.97003 * 120.00187 * 359.97438 * 1 2 3
23 23 H 0.96999 * 124.34441 * 316.03266 * 11 9 7
24 24 H 1.08997 * 110.49250 * 225.07419 * 14 12 11
25 25 H 1.09004 * 110.48337 * 102.42462 * 14 12 11
26 26 H 1.09001 * 110.43639 * 51.29128 * 17 15 9
27 27 H 1.09001 * 110.75228 * 85.01480 * 18 17 15
28 28 H 1.09000 * 110.75571 * 321.64113 * 18 17 15
29 29 H 1.09001 * 110.48816 * 279.26329 * 19 18 17
30 30 H 1.09004 * 110.48531 * 156.62545 * 19 18 17
31 31 H 1.09003 * 110.03179 * 95.67576 * 20 19 18
32 32 H 1.09003 * 110.02980 * 217.05505 * 20 19 18
33 33 H 1.09002 * 110.03208 * 119.28196 * 21 20 19
34 34 H 1.09000 * 110.03462 * 240.66592 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2125
6 1 1.8903 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0017
10 1 0.5929 -2.5563 0.8652
11 7 0.4739 -2.6359 -1.2392
12 6 0.5879 -3.8726 -1.7533
13 8 0.0429 -4.2567 -2.7663
14 6 1.4945 -4.7159 -0.8840
15 6 2.2390 -3.6868 -0.0028
16 1 3.1902 -3.4032 -0.4530
17 6 2.4464 -4.2276 1.4134
18 6 3.2735 -3.2302 2.2620
19 6 3.8831 -4.1381 3.3588
20 6 4.2240 -5.4483 2.6191
21 6 3.3105 -5.5052 1.3822
22 1 -0.4850 0.8401 0.0004
23 1 -0.0539 -1.9250 -1.6353
24 1 2.2011 -5.2739 -1.4983
25 1 0.9068 -5.3941 -0.2653
26 1 1.4861 -4.4281 1.8886
27 1 2.6281 -2.4709 2.7037
28 1 4.0581 -2.7700 1.6613
29 1 3.1549 -4.3241 4.1483
30 1 4.7858 -3.6861 3.7700
31 1 5.2696 -5.4420 2.3112
32 1 4.0309 -6.3037 3.2665
33 1 3.9128 -5.5264 0.4739
34 1 2.6739 -6.3887 1.4285
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261265664.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:06
Heat of formation + Delta-G solvation = -70.945285 kcal
Electronic energy + Delta-G solvation = -15819.834514 eV
Core-core repulsion = 13329.811846 eV
Total energy + Delta-G solvation = -2490.022668 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.131 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.47640 -37.54907 -35.27274 -32.58115 -30.96013 -28.62406 -27.60128 -26.81238
-23.57237 -20.67693 -20.20669 -19.24830 -19.02022 -16.99654 -15.67102 -15.55660
-15.06887 -14.58339 -13.98162 -13.69785 -13.03254 -12.98245 -12.56840 -12.37704
-12.02086 -11.97731 -11.08074 -10.99789 -10.89336 -10.70123 -10.54321 -10.48729
-10.32013 -10.19487 -9.92900 -9.89595 -9.26700 -8.93498 -8.62640 -7.61879
-6.28150 -4.37798 3.17031 3.27154 3.29797 3.65674 4.24727 4.67119
4.92813 5.00895 5.04524 5.17972 5.53150 5.55010 5.61000 5.80192
5.94876 5.97136 6.01043 6.06563 6.14206 6.21762 6.27996 6.36130
6.45561 6.56923 6.63046 6.71459 6.85519 6.97820 7.38345 7.68001
7.89753 8.18633 8.42864 8.77888 9.32605 9.50496 10.79132
Molecular weight = 223.13amu
Principal moments of inertia in cm(-1)
A = 0.020121 B = 0.011759 C = 0.007902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1391.228205 B = 2380.511851 C = 3542.644368
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.070 3.930
3 Si 0.896 3.104
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.282 1.282
7 C -0.523 4.523
8 H 0.067 0.933
9 C 0.255 3.745
10 H 0.044 0.956
11 N -0.689 5.689
12 C 0.497 3.503
13 O -0.588 6.588
14 C -0.151 4.151
15 C -0.086 4.086
16 H 0.080 0.920
17 C -0.072 4.072
18 C -0.108 4.108
19 C -0.128 4.128
20 C -0.123 4.123
21 C -0.121 4.121
22 H 0.266 0.734
23 H 0.409 0.591
24 H 0.082 0.918
25 H 0.088 0.912
26 H 0.070 0.930
27 H 0.074 0.926
28 H 0.069 0.931
29 H 0.059 0.941
30 H 0.058 0.942
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.062 0.938
34 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.560 -6.549 6.013 11.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.134 4.134
3 Si 0.724 3.276
4 H -0.195 1.195
5 H -0.209 1.209
6 H -0.208 1.208
7 C -0.562 4.562
8 H 0.085 0.915
9 C 0.154 3.846
10 H 0.061 0.939
11 N -0.340 5.340
12 C 0.282 3.718
13 O -0.472 6.472
14 C -0.191 4.191
15 C -0.105 4.105
16 H 0.099 0.901
17 C -0.091 4.091
18 C -0.146 4.146
19 C -0.166 4.166
20 C -0.161 4.161
21 C -0.158 4.158
22 H 0.076 0.924
23 H 0.248 0.752
24 H 0.100 0.900
25 H 0.106 0.894
26 H 0.088 0.912
27 H 0.092 0.908
28 H 0.087 0.913
29 H 0.078 0.922
30 H 0.076 0.924
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 6.204 -6.691 5.595 10.703
hybrid contribution 0.173 1.296 -0.126 1.313
sum 6.377 -5.395 5.468 9.984
Atomic orbital electron populations
1.69894 1.06029 1.27407 1.49153 1.25112 0.94925 0.99676 0.93733
0.86465 0.80232 0.83200 0.77732 1.19500 1.20922 1.20812 1.21356
0.93357 0.89773 1.51707 0.91455 1.19414 0.88621 0.92770 0.83814
0.93851 1.47104 1.48120 1.11589 1.27192 1.20946 0.81827 0.84324
0.84707 1.90608 1.52950 1.76846 1.26785 1.22356 0.99157 0.98642
0.98945 1.22298 0.99543 0.94907 0.93793 0.90134 1.21867 0.98295
0.93996 0.94963 1.22454 0.99212 0.97048 0.95882 1.22412 1.00122
0.95824 0.98251 1.22123 0.99328 0.97658 0.96976 1.22221 0.97848
0.97968 0.97804 0.92401 0.75193 0.89960 0.89365 0.91185 0.90770
0.91255 0.92189 0.92353 0.92413 0.92663 0.91887 0.92433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.41 12.38 55.43 0.69 -22.72 16
2 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16
3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16
4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16
5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
7 C -0.52 -12.74 8.34 -34.44 -0.29 -13.03 16
8 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16
9 C 0.26 5.75 2.68 -68.16 -0.18 5.56 16
10 H 0.04 1.06 7.83 -51.93 -0.41 0.65 16
11 N -0.69 -16.34 5.69 -53.89 -0.31 -16.65 16
12 C 0.50 11.35 8.43 -10.86 -0.09 11.26 16
13 O -0.59 -15.20 18.03 5.56 0.10 -15.10 16
14 C -0.15 -2.74 5.88 -26.76 -0.16 -2.89 16
15 C -0.09 -1.58 2.00 -89.00 -0.18 -1.76 16
16 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16
17 C -0.07 -1.12 2.20 -88.96 -0.20 -1.32 16
18 C -0.11 -1.67 5.73 -24.74 -0.14 -1.81 16
19 C -0.13 -1.62 6.83 -25.07 -0.17 -1.79 16
20 C -0.12 -1.45 6.80 -25.61 -0.17 -1.62 16
21 C -0.12 -1.57 5.83 -25.61 -0.15 -1.72 16
22 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16
23 H 0.41 10.34 8.13 -40.82 -0.33 10.00 16
24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
25 H 0.09 1.46 7.90 -51.93 -0.41 1.05 16
26 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16
27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
28 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16
29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16
34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 275.53 15.07 4.15 4.15
Total: -1.00 -27.56 275.53 -7.50 -35.06
By element:
Atomic # 1 Polarization: 13.20 SS G_CDS: -5.29 Total: 7.91 kcal
Atomic # 6 Polarization: -5.63 SS G_CDS: -1.83 Total: -7.46 kcal
Atomic # 7 Polarization: -39.75 SS G_CDS: 0.38 Total: -39.37 kcal
Atomic # 8 Polarization: -15.20 SS G_CDS: 0.10 Total: -15.10 kcal
Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -27.56 -7.50 -35.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261265664.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.886 kcal
(2) G-P(sol) polarization free energy of solvation -27.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds