Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48508 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47480 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47184 * 60.00379 * 3 2 1 7 7 C 1.37881 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99847 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.28670 * 301.97267 * 9 7 2 11 11 N 1.46763 * 110.24933 * 63.95350 * 9 7 2 12 12 C 1.34418 * 111.30364 * 136.01592 * 11 9 7 13 13 O 1.21275 * 124.94009 * 179.55860 * 12 11 9 14 14 C 1.51278 * 110.11702 * 359.58767 * 12 11 9 15 15 C 1.54486 * 110.24231 * 179.97438 * 9 7 2 16 16 H 1.08992 * 111.00198 * 333.71884 * 15 9 7 17 17 C 1.53005 * 110.96479 * 97.46710 * 15 9 7 18 18 C 1.54893 * 110.59682 * 288.66880 * 17 15 9 19 19 C 1.54887 * 102.74533 * 203.32744 * 18 17 15 20 20 C 1.54266 * 104.19888 * 37.94403 * 19 18 17 21 21 C 1.53872 * 106.59640 * 336.38805 * 20 19 18 22 22 H 0.97003 * 120.00187 * 359.97438 * 1 2 3 23 23 H 0.96999 * 124.34441 * 316.03266 * 11 9 7 24 24 H 1.08997 * 110.49250 * 225.07419 * 14 12 11 25 25 H 1.09004 * 110.48337 * 102.42462 * 14 12 11 26 26 H 1.09001 * 110.43639 * 51.29128 * 17 15 9 27 27 H 1.09001 * 110.75228 * 85.01480 * 18 17 15 28 28 H 1.09000 * 110.75571 * 321.64113 * 18 17 15 29 29 H 1.09001 * 110.48816 * 279.26329 * 19 18 17 30 30 H 1.09004 * 110.48531 * 156.62545 * 19 18 17 31 31 H 1.09003 * 110.03179 * 95.67576 * 20 19 18 32 32 H 1.09003 * 110.02980 * 217.05505 * 20 19 18 33 33 H 1.09002 * 110.03208 * 119.28196 * 21 20 19 34 34 H 1.09000 * 110.03462 * 240.66592 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5929 -2.5563 0.8652 11 7 0.4739 -2.6359 -1.2392 12 6 0.5879 -3.8726 -1.7533 13 8 0.0429 -4.2567 -2.7663 14 6 1.4945 -4.7159 -0.8840 15 6 2.2390 -3.6868 -0.0028 16 1 3.1902 -3.4032 -0.4530 17 6 2.4464 -4.2276 1.4134 18 6 3.2735 -3.2302 2.2620 19 6 3.8831 -4.1381 3.3588 20 6 4.2240 -5.4483 2.6191 21 6 3.3105 -5.5052 1.3822 22 1 -0.4850 0.8401 0.0004 23 1 -0.0539 -1.9250 -1.6353 24 1 2.2011 -5.2739 -1.4983 25 1 0.9068 -5.3941 -0.2653 26 1 1.4861 -4.4281 1.8886 27 1 2.6281 -2.4709 2.7037 28 1 4.0581 -2.7700 1.6613 29 1 3.1549 -4.3241 4.1483 30 1 4.7858 -3.6861 3.7700 31 1 5.2696 -5.4420 2.3112 32 1 4.0309 -6.3037 3.2665 33 1 3.9128 -5.5264 0.4739 34 1 2.6739 -6.3887 1.4285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -87.590347 kcal Electronic energy + Delta-G solvation = -15820.556298 eV Core-core repulsion = 13329.811846 eV Total energy + Delta-G solvation = -2490.744452 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14253 -38.92808 -36.99573 -34.46724 -32.50986 -30.01300 -28.96165 -28.31131 -25.30145 -22.19915 -21.49066 -20.73195 -20.37442 -18.87814 -17.47346 -17.01633 -16.44829 -16.35752 -15.44451 -15.28637 -14.49552 -14.29587 -14.21092 -13.94573 -13.70795 -13.48249 -12.86668 -12.50786 -12.27380 -11.96349 -11.94046 -11.84941 -11.68681 -11.53230 -11.27164 -11.06833 -10.87376 -10.82156 -10.48407 -9.53627 -8.22574 -6.36978 1.39367 1.44682 1.53793 1.84173 2.38881 2.81505 3.30893 3.70581 3.79078 3.95316 4.02153 4.22704 4.37229 4.57318 4.76753 4.78461 4.85116 4.90190 4.97411 5.02936 5.10653 5.12050 5.26604 5.29171 5.39702 5.57599 5.60694 5.68459 5.72699 5.75763 6.01757 6.30700 6.52573 6.89066 7.36311 7.59855 8.84350 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.011759 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.228205 B = 2380.511851 C = 3542.644368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.252 3.748 10 H 0.020 0.980 11 N -0.699 5.699 12 C 0.487 3.513 13 O -0.622 6.622 14 C -0.136 4.136 15 C -0.073 4.073 16 H 0.078 0.922 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.116 4.116 22 H 0.265 0.735 23 H 0.396 0.604 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -7.875 6.855 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.151 3.849 10 H 0.037 0.963 11 N -0.347 5.347 12 C 0.274 3.726 13 O -0.508 6.508 14 C -0.176 4.176 15 C -0.092 4.092 16 H 0.097 0.903 17 C -0.090 4.090 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.154 4.154 22 H 0.074 0.926 23 H 0.232 0.768 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.985 -8.030 6.458 13.037 hybrid contribution -0.415 1.741 -0.396 1.833 sum 7.570 -6.289 6.063 11.559 Atomic orbital electron populations 1.69997 1.07248 1.27885 1.50478 1.25802 0.95558 1.02619 0.93753 0.85565 0.79461 0.79714 0.77267 1.18639 1.21460 1.20668 1.21623 0.93546 0.90663 1.50680 0.91263 1.19418 0.88851 0.94196 0.82464 0.96255 1.47256 1.48135 1.11842 1.27511 1.21735 0.81822 0.84411 0.84586 1.90580 1.54437 1.77377 1.28412 1.22356 0.98679 0.98112 0.98405 1.22204 0.98041 0.93130 0.95834 0.90328 1.21850 0.98837 0.95489 0.92832 1.22410 0.98631 0.97069 0.96801 1.22380 1.00484 0.95751 0.97465 1.22112 0.99562 0.97524 0.96466 1.22195 0.97797 0.96637 0.98745 0.92588 0.76784 0.87394 0.87074 0.91610 0.93259 0.92225 0.91678 0.91317 0.91447 0.90909 0.91470 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 12.38 21.45 0.27 -49.21 16 2 C 0.02 1.21 5.40 84.66 0.46 1.67 16 3 Si 0.95 40.89 29.54 68.60 2.03 42.92 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -25.80 8.34 25.60 0.21 -25.59 16 8 H 0.07 3.31 7.60 -2.91 -0.02 3.28 16 9 C 0.25 11.44 2.68 44.70 0.12 11.56 16 10 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 11 N -0.70 -33.67 5.69 -442.99 -2.52 -36.19 16 12 C 0.49 22.09 8.43 87.90 0.74 22.83 16 13 O -0.62 -32.13 18.03 -3.01 -0.05 -32.19 16 14 C -0.14 -4.63 5.88 30.58 0.18 -4.45 16 15 C -0.07 -2.57 2.00 -9.74 -0.02 -2.59 16 16 H 0.08 2.82 7.75 -2.39 -0.02 2.80 16 17 C -0.07 -2.08 2.20 -9.72 -0.02 -2.10 16 18 C -0.11 -3.30 5.73 31.89 0.18 -3.12 16 19 C -0.12 -2.78 6.83 31.67 0.22 -2.57 16 20 C -0.12 -2.34 6.80 31.32 0.21 -2.13 16 21 C -0.12 -2.59 5.83 31.32 0.18 -2.41 16 22 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 23 H 0.40 20.66 8.13 -92.71 -0.75 19.91 16 24 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.11 3.33 7.90 -2.38 -0.02 3.31 16 26 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.47 7.84 -2.39 -0.02 1.45 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -59.30 275.53 2.51 -56.79 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.33 Total: 26.78 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 2.47 Total: -8.90 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.26 Total: -85.40 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -59.30 2.51 -56.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.799 kcal (2) G-P(sol) polarization free energy of solvation -59.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds