Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48498 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48489 * 109.47166 * 299.99929 * 3 2 1 6 6 H 1.48494 * 109.47253 * 60.00262 * 3 2 1 7 7 C 1.37876 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00773 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99618 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.28820 * 58.02460 * 9 7 2 11 11 N 1.46763 * 110.24767 * 296.05090 * 9 7 2 12 12 C 1.34430 * 111.29694 * 258.01798 * 11 9 7 13 13 O 1.21281 * 124.93865 * 179.55901 * 12 11 9 14 14 C 1.51275 * 110.11452 * 359.58819 * 12 11 9 15 15 C 1.54483 * 110.24394 * 179.97438 * 9 7 2 16 16 H 1.08996 * 111.00058 * 335.45147 * 15 9 7 17 17 C 1.53002 * 110.96742 * 211.70194 * 15 9 7 18 18 C 1.54892 * 110.59807 * 69.48780 * 17 15 9 19 19 C 1.54888 * 102.74611 * 156.67207 * 18 17 15 20 20 C 1.54265 * 104.19721 * 322.05788 * 19 18 17 21 21 C 1.53873 * 106.59997 * 23.61451 * 20 19 18 22 22 H 0.97001 * 119.99791 * 359.97438 * 1 2 3 23 23 H 0.96993 * 124.35166 * 78.03293 * 11 9 7 24 24 H 1.09006 * 110.48763 * 225.06786 * 14 12 11 25 25 H 1.09004 * 110.59728 * 102.48690 * 14 12 11 26 26 H 1.09002 * 110.43771 * 306.87004 * 17 15 9 27 27 H 1.08992 * 110.75663 * 274.99068 * 18 17 15 28 28 H 1.09000 * 110.75339 * 38.36092 * 18 17 15 29 29 H 1.09007 * 110.48520 * 203.37936 * 19 18 17 30 30 H 1.08996 * 110.48377 * 80.74349 * 19 18 17 31 31 H 1.08993 * 110.03585 * 264.31946 * 20 19 18 32 32 H 1.09005 * 110.02598 * 142.89513 * 20 19 18 33 33 H 1.09002 * 110.03017 * 240.71676 * 21 20 19 34 34 H 1.08996 * 110.07624 * 119.30418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5929 -2.5555 -0.8676 11 7 0.4739 -2.6369 1.2368 12 6 1.0810 -3.4643 2.1051 13 8 0.6584 -3.7475 3.2061 14 6 2.3684 -3.9900 1.5095 15 6 2.2390 -3.6867 -0.0018 16 1 3.2001 -3.3949 -0.4252 17 6 1.6541 -4.8847 -0.7527 18 6 1.5711 -4.5886 -2.2708 19 6 1.5646 -6.0059 -2.8955 20 6 2.5449 -6.8109 -2.0176 21 6 2.6017 -6.0981 -0.6551 22 1 -0.4850 0.8401 0.0004 23 1 -0.3695 -2.1888 1.4061 24 1 2.4558 -5.0636 1.6770 25 1 3.2273 -3.4679 1.9312 26 1 0.6696 -5.1369 -0.3589 27 1 0.6508 -4.0563 -2.5108 28 1 2.4427 -4.0243 -2.6025 29 1 1.9170 -5.9700 -3.9264 30 1 0.5656 -6.4391 -2.8478 31 1 3.5340 -6.8212 -2.4753 32 1 2.1812 -7.8306 -1.8906 33 1 3.6186 -5.7622 -0.4516 34 1 2.2663 -6.7713 0.1337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -87.375955 kcal Electronic energy + Delta-G solvation = -15834.823603 eV Core-core repulsion = 13344.088448 eV Total energy + Delta-G solvation = -2490.735155 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21776 -38.87539 -37.00488 -34.39150 -32.41966 -29.89173 -28.90450 -28.66289 -25.37945 -22.26379 -21.43039 -20.83926 -20.37488 -18.73971 -17.84962 -16.72477 -16.49357 -16.32249 -15.49539 -15.34350 -14.47731 -14.35183 -14.26460 -14.03899 -13.52244 -13.13507 -12.89230 -12.63618 -12.43073 -12.18842 -11.94450 -11.92151 -11.74750 -11.38400 -11.26233 -11.13817 -10.93876 -10.79065 -10.50104 -9.52323 -8.21476 -6.36953 1.38724 1.43596 1.52710 1.89541 2.38753 2.84537 3.31492 3.66340 3.82823 3.85597 3.99309 4.20392 4.42572 4.52540 4.69477 4.73088 4.83010 4.89013 4.96114 4.98358 5.06284 5.14708 5.23468 5.30240 5.33770 5.42948 5.51633 5.63651 5.68046 5.70131 6.14846 6.30901 6.49811 6.86771 7.37253 7.63617 8.84464 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026633 B = 0.009560 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.058150 B = 2928.305203 C = 3538.649079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.252 3.748 10 H 0.033 0.967 11 N -0.695 5.695 12 C 0.495 3.505 13 O -0.625 6.625 14 C -0.133 4.133 15 C -0.074 4.074 16 H 0.096 0.904 17 C -0.081 4.081 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.118 4.118 22 H 0.264 0.736 23 H 0.393 0.607 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -9.749 -6.348 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.150 3.850 10 H 0.050 0.950 11 N -0.343 5.343 12 C 0.283 3.717 13 O -0.511 6.511 14 C -0.173 4.173 15 C -0.093 4.093 16 H 0.115 0.885 17 C -0.100 4.100 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.155 4.155 22 H 0.073 0.927 23 H 0.228 0.772 24 H 0.126 0.874 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.796 -9.834 -5.894 12.847 hybrid contribution -0.543 1.658 0.332 1.776 sum 5.254 -8.176 -5.562 11.198 Atomic orbital electron populations 1.69966 1.07263 1.27812 1.50227 1.25775 0.95607 1.02609 0.93659 0.85568 0.79519 0.79684 0.77238 1.18550 1.20443 1.21689 1.21844 0.93721 0.91385 1.51196 0.91362 1.19407 0.89556 0.93077 0.82945 0.94955 1.47038 1.24127 1.43660 1.19442 1.21552 0.87483 0.78895 0.83765 1.90572 1.72379 1.65470 1.22699 1.22280 0.95288 1.02982 0.96747 1.22237 0.99747 0.94192 0.93134 0.88530 1.21928 0.98289 0.94226 0.95512 1.22490 1.01378 0.97404 0.94218 1.22352 0.99640 0.94520 0.99372 1.22111 0.99892 0.98893 0.94722 1.22202 0.99673 0.95675 0.97960 0.92677 0.77151 0.87418 0.88031 0.93146 0.93331 0.91140 0.90684 0.92048 0.90827 0.91221 0.90741 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.63 12.65 21.45 0.27 -49.36 16 2 C 0.02 1.29 5.42 84.65 0.46 1.75 16 3 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.54 -27.03 8.73 25.60 0.22 -26.80 16 8 H 0.07 3.28 7.58 -2.91 -0.02 3.26 16 9 C 0.25 11.37 2.77 44.70 0.12 11.49 16 10 H 0.03 1.58 7.05 -2.39 -0.02 1.57 16 11 N -0.70 -33.21 5.55 -442.95 -2.46 -35.67 16 12 C 0.50 22.91 8.43 87.89 0.74 23.65 16 13 O -0.62 -32.84 18.03 -3.03 -0.05 -32.89 16 14 C -0.13 -4.79 6.27 30.61 0.19 -4.60 16 15 C -0.07 -2.60 2.00 -9.71 -0.02 -2.62 16 16 H 0.10 3.22 7.73 -2.39 -0.02 3.20 16 17 C -0.08 -2.42 2.38 -9.72 -0.02 -2.44 16 18 C -0.12 -3.29 5.76 31.89 0.18 -3.11 16 19 C -0.12 -2.65 6.83 31.67 0.22 -2.43 16 20 C -0.12 -2.33 6.80 31.32 0.21 -2.11 16 21 C -0.12 -2.73 5.33 31.32 0.17 -2.56 16 22 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 23 H 0.39 19.98 8.55 -92.71 -0.79 19.19 16 24 H 0.11 3.31 7.01 -2.38 -0.02 3.30 16 25 H 0.10 3.48 8.14 -2.38 -0.02 3.47 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.52 7.72 -2.39 -0.02 1.50 16 28 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 29 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.61 7.84 -2.39 -0.02 1.59 16 34 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 Total: -1.00 -60.03 274.55 2.55 -57.48 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.29 Total: 26.75 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 2.48 Total: -9.79 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.19 Total: -85.03 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -60.03 2.55 -57.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.892 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds