Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47044 * 269.99979 * 3 2 1 5 5 H 1.48501 * 109.47093 * 30.00072 * 3 2 1 6 6 H 1.48497 * 109.47204 * 149.99613 * 3 2 1 7 7 C 1.37880 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99925 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.28643 * 294.49650 * 9 7 2 11 11 N 1.46768 * 110.24406 * 56.47300 * 9 7 2 12 12 C 1.34413 * 111.30078 * 136.01750 * 11 9 7 13 13 O 1.21281 * 124.94557 * 179.55494 * 12 11 9 14 14 C 1.51281 * 110.11707 * 359.81890 * 12 11 9 15 15 C 1.54471 * 110.24603 * 172.51805 * 9 7 2 16 16 H 1.09002 * 110.97202 * 97.42913 * 15 9 7 17 17 C 1.53000 * 110.96989 * 333.70638 * 15 9 7 18 18 C 1.54266 * 110.03098 * 300.17844 * 17 15 9 19 19 C 1.54967 * 104.16326 * 217.13900 * 18 17 15 20 20 C 1.54890 * 102.77710 * 37.88517 * 19 18 17 21 21 C 1.53885 * 110.03146 * 182.96617 * 17 15 9 22 22 H 0.96997 * 119.99750 * 0.02562 * 1 2 3 23 23 H 0.97001 * 124.34796 * 315.99350 * 11 9 7 24 24 H 1.09000 * 110.49060 * 102.19683 * 14 12 11 25 25 H 1.08999 * 110.48798 * 224.83848 * 14 12 11 26 26 H 1.08998 * 110.02113 * 61.57152 * 17 15 9 27 27 H 1.09001 * 110.48580 * 335.78705 * 18 17 15 28 28 H 1.09002 * 110.48482 * 98.42685 * 18 17 15 29 29 H 1.09001 * 110.71547 * 279.57937 * 19 18 17 30 30 H 1.08993 * 110.76937 * 156.22321 * 19 18 17 31 31 H 1.08999 * 110.48953 * 203.40417 * 20 19 18 32 32 H 1.09008 * 110.48612 * 80.76398 * 20 19 18 33 33 H 1.09000 * 110.02810 * 238.56765 * 21 17 15 34 34 H 1.08995 * 110.02991 * 359.94381 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6947 -2.6143 0.9307 11 7 0.3390 -2.5590 -1.1477 12 6 0.3899 -3.7597 -1.7497 13 8 -0.2673 -4.0800 -2.7174 14 6 1.3814 -4.6556 -1.0407 15 6 2.2283 -3.6806 -0.1875 16 1 2.4877 -4.1288 0.7716 17 6 3.4851 -3.2374 -0.9392 18 6 3.1033 -2.6895 -2.3299 19 6 4.2485 -3.1729 -3.2553 20 6 4.5563 -4.5890 -2.7084 21 6 4.4088 -4.4445 -1.1796 22 1 -0.4849 0.8400 -0.0004 23 1 -0.2280 -1.8262 -1.4350 24 1 0.8615 -5.3709 -0.4034 25 1 2.0112 -5.1746 -1.7632 26 1 4.0112 -2.4725 -0.3681 27 1 2.1494 -3.1048 -2.6548 28 1 3.0601 -1.6005 -2.3121 29 1 5.1198 -2.5248 -3.1613 30 1 3.9131 -3.2234 -4.2911 31 1 5.5727 -4.8854 -2.9673 32 1 3.8372 -5.3116 -3.0943 33 1 5.3834 -4.2649 -0.7258 34 1 3.9621 -5.3458 -0.7599 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -55.437110 kcal Electronic energy + Delta-G solvation = -16403.952270 eV Core-core repulsion = 13914.602087 eV Total energy + Delta-G solvation = -2489.350183 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99952 -37.15061 -35.14595 -32.50531 -30.69948 -28.34533 -27.91356 -26.58890 -23.79863 -20.76573 -20.19584 -19.29593 -18.34647 -16.84732 -15.87687 -15.67085 -14.83434 -14.54378 -14.14198 -13.53045 -13.04164 -12.54556 -12.51776 -12.22404 -12.10855 -11.54338 -11.29805 -11.04903 -10.79519 -10.70595 -10.43030 -10.31259 -10.21704 -10.00124 -9.82377 -9.51613 -9.26430 -8.87603 -8.57115 -7.53115 -6.27685 -4.34669 3.18392 3.27215 3.28442 3.68213 4.25128 4.72899 5.10284 5.15518 5.18130 5.26016 5.50996 5.61675 5.72207 5.94679 6.02163 6.08746 6.13915 6.21044 6.24280 6.30889 6.34405 6.47758 6.61262 6.74147 6.78589 6.82638 7.10402 7.17185 7.36954 7.71239 7.91284 8.21783 8.46701 8.80153 9.34270 9.57310 10.80637 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.012447 C = 0.009922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.544139 B = 2248.996102 C = 2821.300481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.254 3.746 10 H 0.037 0.963 11 N -0.684 5.684 12 C 0.501 3.499 13 O -0.589 6.589 14 C -0.155 4.155 15 C -0.089 4.089 16 H 0.075 0.925 17 C -0.068 4.068 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.125 4.125 22 H 0.267 0.733 23 H 0.414 0.586 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -5.380 -0.466 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.152 3.848 10 H 0.054 0.946 11 N -0.336 5.336 12 C 0.286 3.714 13 O -0.473 6.473 14 C -0.196 4.196 15 C -0.108 4.108 16 H 0.093 0.907 17 C -0.086 4.086 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.161 4.161 21 C -0.163 4.163 22 H 0.077 0.923 23 H 0.255 0.745 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.145 -5.481 -0.859 9.046 hybrid contribution 0.144 1.295 -0.014 1.303 sum 7.289 -4.187 -0.873 8.451 Atomic orbital electron populations 1.69795 1.06054 1.27468 1.49730 1.25089 0.94880 0.99569 0.93812 0.86533 0.79893 0.82997 0.78296 1.20508 1.21184 1.19650 1.21487 0.93797 0.89640 1.51520 0.90487 1.19337 0.86514 0.93307 0.85642 0.94550 1.46958 1.42500 1.13329 1.30787 1.20775 0.82819 0.84448 0.83323 1.90619 1.49446 1.78542 1.28735 1.22464 0.98298 0.98438 1.00358 1.22257 0.95244 0.95813 0.97470 0.90702 1.21632 0.94456 0.95902 0.96616 1.22512 0.97270 1.01778 0.93383 1.22573 0.99160 0.96073 0.98944 1.22353 1.00145 0.97501 0.96064 1.22311 0.99353 0.99013 0.95595 0.92349 0.74531 0.89731 0.89444 0.89718 0.91490 0.90652 0.92219 0.92555 0.92727 0.92135 0.92600 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 11.77 55.43 0.65 -22.68 16 2 C 0.07 1.74 5.37 -17.82 -0.10 1.65 16 3 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.53 -12.50 6.81 -34.44 -0.23 -12.73 16 8 H 0.08 1.77 5.25 -52.49 -0.28 1.50 16 9 C 0.25 5.68 3.12 -68.16 -0.21 5.47 16 10 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 11 N -0.68 -15.98 5.16 -53.88 -0.28 -16.25 16 12 C 0.50 11.32 6.03 -10.86 -0.07 11.25 16 13 O -0.59 -15.14 18.03 5.56 0.10 -15.04 16 14 C -0.16 -2.84 5.58 -26.66 -0.15 -2.99 16 15 C -0.09 -1.62 2.85 -88.91 -0.25 -1.87 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.07 -1.17 2.17 -89.50 -0.19 -1.36 16 18 C -0.11 -2.09 4.83 -25.03 -0.12 -2.21 16 19 C -0.13 -2.01 6.91 -24.70 -0.17 -2.18 16 20 C -0.12 -1.71 6.58 -25.07 -0.17 -1.88 16 21 C -0.13 -1.79 5.74 -25.61 -0.15 -1.93 16 22 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.41 10.48 7.46 -40.82 -0.30 10.17 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.09 1.50 6.17 -51.93 -0.32 1.18 16 26 H 0.08 1.54 6.05 -51.93 -0.31 1.23 16 27 H 0.07 1.39 4.31 -51.93 -0.22 1.17 16 28 H 0.07 1.56 7.26 -51.93 -0.38 1.18 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.85 7.72 -51.92 -0.40 0.45 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.81 7.15 -51.93 -0.37 0.44 16 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -26.94 258.47 -7.14 -34.08 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.68 Total: 10.15 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.81 Total: -8.79 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.37 Total: -38.93 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.10 Total: -15.04 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.94 -7.14 -34.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.355 kcal (2) G-P(sol) polarization free energy of solvation -26.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds