Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47416 * 270.00426 * 3 2 1 5 5 H 1.48504 * 109.47420 * 30.00099 * 3 2 1 6 6 H 1.48503 * 109.47159 * 150.00216 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99985 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.34890 * 124.85343 * 89.97477 * 10 9 7 12 12 O 1.21286 * 125.01357 * 358.30952 * 11 10 9 13 13 C 1.51479 * 109.97567 * 178.33103 * 11 10 9 14 14 C 1.55510 * 103.66552 * 342.71858 * 13 11 10 15 15 H 1.09002 * 112.32649 * 147.11389 * 14 13 11 16 16 C 1.52885 * 107.25016 * 270.60700 * 14 13 11 17 17 C 1.53242 * 109.38695 * 164.34110 * 16 14 13 18 18 C 1.52628 * 109.22014 * 296.00002 * 17 16 14 19 19 C 1.51501 * 110.94774 * 59.44761 * 18 17 16 20 20 C 1.46259 * 124.85318 * 270.01639 * 10 9 7 21 21 H 1.09000 * 106.83066 * 86.67157 * 20 10 9 22 22 H 0.96998 * 120.00149 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47182 * 59.99949 * 9 7 2 24 24 H 1.08997 * 109.47541 * 299.99739 * 9 7 2 25 25 H 1.09005 * 110.59047 * 224.17555 * 13 11 10 26 26 H 1.09003 * 110.71928 * 101.32510 * 13 11 10 27 27 H 1.09006 * 109.44972 * 284.96378 * 16 14 13 28 28 H 1.08998 * 109.45286 * 44.89322 * 16 14 13 29 29 H 1.09000 * 109.50627 * 175.97703 * 17 16 14 30 30 H 1.09005 * 109.18290 * 55.82853 * 17 16 14 31 31 H 1.09002 * 109.18227 * 299.07001 * 18 17 16 32 32 H 1.08997 * 109.14567 * 179.80025 * 18 17 16 33 33 H 1.09001 * 108.32035 * 191.31996 * 19 18 17 34 34 H 1.09006 * 108.31949 * 74.33225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2559 -3.3025 -1.1079 12 8 4.0883 -2.9194 -2.2464 13 6 4.7831 -4.6683 -0.7192 14 6 5.2216 -4.4852 0.7615 15 1 5.0828 -5.3923 1.3497 16 6 6.6803 -4.0277 0.7492 17 6 7.0474 -3.4611 2.1248 18 6 6.2090 -2.2146 2.3948 19 6 4.7297 -2.5401 2.3658 20 6 4.2786 -3.3631 1.1993 21 1 3.3402 -3.8335 1.4931 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 5.6363 -4.9410 -1.3405 26 1 3.9983 -5.4209 -0.7962 27 1 7.3242 -4.8742 0.5101 28 1 6.8103 -3.2494 -0.0028 29 1 8.1056 -3.2003 2.1405 30 1 6.8423 -4.2120 2.8879 31 1 6.4259 -1.4653 1.6335 32 1 6.4685 -1.8146 3.3750 33 1 4.1727 -1.6031 2.3598 34 1 4.4789 -3.0766 3.2809 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306192980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -47.782836 kcal Electronic energy + Delta-G solvation = -16075.674584 eV Core-core repulsion = 13586.656315 eV Total energy + Delta-G solvation = -2489.018269 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49233 -37.12631 -34.45249 -33.28696 -32.13892 -29.89858 -27.58560 -26.77815 -23.05942 -21.98627 -21.59988 -19.56019 -18.10896 -17.01012 -15.82838 -15.58480 -15.13983 -14.57662 -14.39957 -14.04840 -13.49235 -12.97173 -12.62676 -12.52004 -12.29383 -12.03797 -11.75408 -11.55721 -11.44268 -11.02097 -10.91502 -10.57261 -10.36502 -10.28966 -10.02251 -9.87755 -9.52515 -8.95017 -8.61130 -7.62997 -6.10901 -4.10026 3.26376 3.32415 3.34195 3.37640 3.93274 4.36682 4.58200 4.71057 4.77896 5.06382 5.21185 5.23416 5.28944 5.37295 5.54517 5.59555 5.71088 5.81496 5.90601 5.96179 6.01569 6.13612 6.22730 6.29046 6.39594 6.46224 6.55155 6.71574 6.88434 7.47511 7.58610 8.11164 8.45043 8.92237 9.04708 9.49286 11.02512 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.010024 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.502689 B = 2792.645161 C = 3228.187143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.226 3.774 10 N -0.588 5.588 11 C 0.509 3.491 12 O -0.542 6.542 13 C -0.155 4.155 14 C -0.093 4.093 15 H 0.097 0.903 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.144 3.856 21 H 0.060 0.940 22 H 0.265 0.735 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.601 -7.780 6.602 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.295 3.705 12 O -0.420 6.420 13 C -0.195 4.195 14 C -0.112 4.112 15 H 0.115 0.885 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.163 4.163 20 C 0.040 3.960 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.293 -7.342 6.021 16.336 hybrid contribution 0.109 0.919 0.028 0.926 sum 13.402 -6.423 6.049 16.045 Atomic orbital electron populations 1.69895 1.06178 1.27008 1.50345 1.24859 0.94780 0.98903 0.94453 0.86877 0.80211 0.83861 0.78944 1.19869 1.20941 1.19009 1.21353 0.89223 0.94909 1.51468 0.90688 1.19568 0.95516 0.77129 0.97199 1.48329 1.63358 1.14993 1.05380 1.20753 0.77871 0.86953 0.84881 1.90662 1.54783 1.75695 1.20894 1.22718 1.02601 0.97221 0.96995 1.22108 0.95232 0.98280 0.95603 0.88460 1.21617 0.94910 1.00642 0.97836 1.21458 0.99099 0.97678 0.97111 1.21112 0.94910 0.97785 1.01476 1.20739 0.96487 1.01995 0.97124 1.20268 0.97874 0.91229 0.86639 0.92179 0.92513 0.94712 0.95043 0.88870 0.88558 0.91665 0.91808 0.92197 0.91957 0.92201 0.92032 0.89916 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.52 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.23 5.57 4.46 -5.19 -0.02 5.55 16 10 N -0.59 -12.50 2.88 -169.17 -0.49 -12.98 16 11 C 0.51 10.88 7.75 -10.55 -0.08 10.80 16 12 O -0.54 -14.06 17.67 5.55 0.10 -13.96 16 13 C -0.15 -2.31 6.25 -26.17 -0.16 -2.47 16 14 C -0.09 -1.18 3.52 -89.36 -0.31 -1.50 16 15 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.11 -1.29 5.03 -26.67 -0.13 -1.43 16 17 C -0.12 -1.21 5.92 -26.80 -0.16 -1.37 16 18 C -0.12 -1.43 5.94 -27.68 -0.16 -1.60 16 19 C -0.13 -1.83 5.23 -29.11 -0.15 -1.98 16 20 C 0.14 2.35 2.90 -69.70 -0.20 2.15 16 21 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.04 0.81 5.15 -51.93 -0.27 0.54 16 24 H 0.03 0.83 7.41 -51.93 -0.39 0.45 16 25 H 0.09 1.22 7.83 -51.93 -0.41 0.81 16 26 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.42 5.95 -51.93 -0.31 1.11 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 268.86 15.07 4.05 4.05 Total: -1.00 -33.62 268.86 -7.23 -40.85 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.16 Total: -2.26 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.83 Total: -5.57 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.29 Total: -39.96 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.62 -7.23 -40.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.933 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds