Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48502 * 109.47416 * 270.00426 * 3 2 1 5 5 H 1.48504 * 109.47420 * 30.00099 * 3 2 1 6 6 H 1.48503 * 109.47159 * 150.00216 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99985 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.34890 * 124.85343 * 89.97477 * 10 9 7 12 12 O 1.21286 * 125.01357 * 358.30952 * 11 10 9 13 13 C 1.51479 * 109.97567 * 178.33103 * 11 10 9 14 14 C 1.55510 * 103.66552 * 342.71858 * 13 11 10 15 15 H 1.09002 * 112.32649 * 147.11389 * 14 13 11 16 16 C 1.52885 * 107.25016 * 270.60700 * 14 13 11 17 17 C 1.53242 * 109.38695 * 164.34110 * 16 14 13 18 18 C 1.52628 * 109.22014 * 296.00002 * 17 16 14 19 19 C 1.51501 * 110.94774 * 59.44761 * 18 17 16 20 20 C 1.46259 * 124.85318 * 270.01639 * 10 9 7 21 21 H 1.09000 * 106.83066 * 86.67157 * 20 10 9 22 22 H 0.96998 * 120.00149 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47182 * 59.99949 * 9 7 2 24 24 H 1.08997 * 109.47541 * 299.99739 * 9 7 2 25 25 H 1.09005 * 110.59047 * 224.17555 * 13 11 10 26 26 H 1.09003 * 110.71928 * 101.32510 * 13 11 10 27 27 H 1.09006 * 109.44972 * 284.96378 * 16 14 13 28 28 H 1.08998 * 109.45286 * 44.89322 * 16 14 13 29 29 H 1.09000 * 109.50627 * 175.97703 * 17 16 14 30 30 H 1.09005 * 109.18290 * 55.82853 * 17 16 14 31 31 H 1.09002 * 109.18227 * 299.07001 * 18 17 16 32 32 H 1.08997 * 109.14567 * 179.80025 * 18 17 16 33 33 H 1.09001 * 108.32035 * 191.31996 * 19 18 17 34 34 H 1.09006 * 108.31949 * 74.33225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2559 -3.3025 -1.1079 12 8 4.0883 -2.9194 -2.2464 13 6 4.7831 -4.6683 -0.7192 14 6 5.2216 -4.4852 0.7615 15 1 5.0828 -5.3923 1.3497 16 6 6.6803 -4.0277 0.7492 17 6 7.0474 -3.4611 2.1248 18 6 6.2090 -2.2146 2.3948 19 6 4.7297 -2.5401 2.3658 20 6 4.2786 -3.3631 1.1993 21 1 3.3402 -3.8335 1.4931 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 5.6363 -4.9410 -1.3405 26 1 3.9983 -5.4209 -0.7962 27 1 7.3242 -4.8742 0.5101 28 1 6.8103 -3.2494 -0.0028 29 1 8.1056 -3.2003 2.1405 30 1 6.8423 -4.2120 2.8879 31 1 6.4259 -1.4653 1.6335 32 1 6.4685 -1.8146 3.3750 33 1 4.1727 -1.6031 2.3598 34 1 4.4789 -3.0766 3.2809 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306192980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -70.937417 kcal Electronic energy + Delta-G solvation = -16076.678642 eV Core-core repulsion = 13586.656315 eV Total energy + Delta-G solvation = -2490.022327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.88672 -38.63790 -36.09101 -34.94102 -33.83381 -31.29690 -29.32058 -28.06521 -24.81952 -23.30351 -22.70331 -20.93692 -19.56442 -19.21051 -17.35544 -17.15852 -16.56153 -16.12363 -15.78726 -15.46644 -14.92084 -14.50752 -14.37726 -13.89760 -13.75647 -13.48578 -13.25109 -12.81842 -12.67991 -12.54937 -12.49508 -12.11386 -11.99475 -11.80972 -11.36800 -11.09124 -10.97549 -10.88751 -10.61880 -9.38321 -8.40124 -6.46387 1.27495 1.31563 1.40339 1.71209 2.25154 2.34208 2.92998 3.46463 3.48399 3.75246 4.01671 4.17379 4.26030 4.37693 4.53320 4.56703 4.56955 4.70516 4.75472 4.79861 4.84088 4.98548 5.11356 5.16705 5.25773 5.33375 5.36005 5.42512 5.48090 5.59498 5.76402 6.19662 6.48691 6.54942 7.13761 7.37236 8.77024 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.010024 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.502689 B = 2792.645161 C = 3228.187143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.239 1.239 7 C -0.542 4.542 8 H 0.026 0.974 9 C 0.235 3.765 10 N -0.599 5.599 11 C 0.487 3.513 12 O -0.603 6.603 13 C -0.142 4.142 14 C -0.075 4.075 15 H 0.141 0.859 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.124 4.124 20 C 0.134 3.866 21 H 0.047 0.953 22 H 0.270 0.730 23 H 0.055 0.945 24 H 0.011 0.989 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.437 -8.741 8.467 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.162 1.162 7 C -0.581 4.581 8 H 0.044 0.956 9 C 0.114 3.886 10 N -0.330 5.330 11 C 0.277 3.723 12 O -0.486 6.486 13 C -0.182 4.182 14 C -0.093 4.093 15 H 0.159 0.841 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.162 4.162 20 C 0.031 3.969 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.136 0.864 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.151 -8.342 7.935 19.835 hybrid contribution -0.877 1.152 -0.555 1.550 sum 15.274 -7.190 7.380 18.425 Atomic orbital electron populations 1.70044 1.08187 1.28502 1.51465 1.25866 0.95733 1.03335 0.93631 0.85729 0.79901 0.78283 0.79190 1.19991 1.19456 1.16185 1.21545 0.91547 0.93276 1.51721 0.95586 1.19203 0.92599 0.79945 0.96894 1.48502 1.62650 1.14122 1.07711 1.22047 0.76970 0.89354 0.83974 1.90607 1.57268 1.77475 1.23210 1.22750 1.03643 0.92767 0.99009 1.22229 0.95066 0.98106 0.93931 0.84134 1.21664 0.94326 1.01062 0.97904 1.21447 0.99455 0.96888 0.96895 1.21128 0.93593 0.98642 1.01814 1.20744 0.97762 1.00331 0.97357 1.20690 0.98795 0.91964 0.85426 0.93524 0.92069 0.92763 0.97058 0.86442 0.86986 0.88438 0.94653 0.90594 0.89536 0.94617 0.90110 0.93351 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.54 -33.08 9.94 25.60 0.25 -32.83 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 9 C 0.24 11.99 4.46 85.63 0.38 12.38 16 10 N -0.60 -25.99 2.88 -807.46 -2.33 -28.32 16 11 C 0.49 21.26 7.75 87.89 0.68 21.94 16 12 O -0.60 -32.70 17.67 -3.05 -0.05 -32.76 16 13 C -0.14 -3.92 6.25 30.96 0.19 -3.72 16 14 C -0.07 -1.62 3.52 -9.98 -0.04 -1.66 16 15 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.11 -2.11 5.03 30.64 0.15 -1.95 16 17 C -0.11 -1.77 5.92 30.55 0.18 -1.59 16 18 C -0.11 -2.52 5.94 29.98 0.18 -2.34 16 19 C -0.12 -3.38 5.23 29.05 0.15 -3.23 16 20 C 0.13 4.21 2.90 43.97 0.13 4.34 16 21 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 22 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 23 H 0.05 2.55 5.15 -2.39 -0.01 2.54 16 24 H 0.01 0.62 7.41 -2.39 -0.02 0.60 16 25 H 0.12 2.71 7.83 -2.38 -0.02 2.69 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.03 0.87 7.76 -2.39 -0.02 0.86 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.64 5.95 -2.39 -0.01 1.63 16 34 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -79.38 268.86 3.55 -75.83 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.01 Total: 5.93 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 2.73 Total: -7.44 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.03 Total: -88.52 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -79.38 3.55 -75.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.897 kcal (2) G-P(sol) polarization free energy of solvation -79.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds