Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00621 * 2 1 4 4 H 1.48503 * 109.47420 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46976 * 300.00160 * 3 2 1 6 6 H 1.48500 * 109.46843 * 59.99744 * 3 2 1 7 7 C 1.37881 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99862 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.34837 * 124.80775 * 89.97440 * 10 9 7 12 12 O 1.21283 * 125.01073 * 1.26105 * 11 10 9 13 13 C 1.51466 * 109.97352 * 181.52532 * 11 10 9 14 14 C 1.55225 * 103.79695 * 16.48847 * 13 11 10 15 15 H 1.09003 * 111.62689 * 215.68741 * 14 13 11 16 16 C 1.51745 * 107.87854 * 93.76739 * 14 13 11 17 17 C 1.52304 * 112.14942 * 202.77608 * 16 14 13 18 18 C 1.53169 * 108.78458 * 59.24771 * 17 16 14 19 19 C 1.52448 * 108.57768 * 295.51919 * 18 17 16 20 20 C 1.46452 * 124.81320 * 270.00037 * 10 9 7 21 21 H 1.09002 * 107.20787 * 274.51780 * 20 10 9 22 22 H 0.96999 * 119.99451 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47456 * 60.00004 * 9 7 2 24 24 H 1.09000 * 109.47069 * 299.99921 * 9 7 2 25 25 H 1.08998 * 110.57698 * 135.15934 * 13 11 10 26 26 H 1.08992 * 110.58068 * 258.05553 * 13 11 10 27 27 H 1.08992 * 108.94494 * 82.08661 * 16 14 13 28 28 H 1.08997 * 108.87425 * 323.41476 * 16 14 13 29 29 H 1.08997 * 109.58412 * 299.45141 * 17 16 14 30 30 H 1.09004 * 109.58239 * 179.03684 * 17 16 14 31 31 H 1.09004 * 109.61445 * 175.79486 * 18 17 16 32 32 H 1.08993 * 109.61883 * 55.24623 * 18 17 16 33 33 H 1.08999 * 108.87779 * 296.34583 * 19 18 17 34 34 H 1.08995 * 108.79934 * 177.83872 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.7033 -4.1975 1.1076 12 8 2.4153 -3.8935 2.2459 13 6 3.6831 -5.2857 0.7201 14 6 4.0105 -4.9770 -0.7655 15 1 4.1514 -5.8901 -1.3439 16 6 5.2628 -4.1207 -0.7983 17 6 5.3713 -3.3111 -2.0838 18 6 4.1419 -2.4051 -2.2013 19 6 2.9038 -3.2829 -2.3456 20 6 2.7461 -4.2483 -1.2019 21 1 2.0329 -5.0115 -1.5134 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 4.5831 -5.2265 1.3321 26 1 3.2203 -6.2682 0.8115 27 1 6.1360 -4.7673 -0.7125 28 1 5.2446 -3.4367 0.0502 29 1 5.4108 -3.9863 -2.9385 30 1 6.2738 -2.7005 -2.0559 31 1 4.2412 -1.7654 -3.0783 32 1 4.0527 -1.7911 -1.3053 33 1 2.9777 -3.8468 -3.2754 34 1 2.0228 -2.6428 -2.3908 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306192982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -72.825086 kcal Electronic energy + Delta-G solvation = -16303.333631 eV Core-core repulsion = 13813.229448 eV Total energy + Delta-G solvation = -2490.104182 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82706 -38.57350 -35.96524 -35.00244 -33.62319 -31.00136 -28.86846 -28.03265 -25.01192 -23.28567 -22.74211 -20.96405 -19.59544 -18.54966 -17.33387 -17.09108 -16.42374 -16.23898 -15.74623 -15.14950 -14.68993 -14.56000 -14.25096 -13.79142 -13.59794 -13.27806 -13.06503 -12.87146 -12.67374 -12.60161 -12.47761 -12.14396 -11.89602 -11.72837 -11.20679 -11.03418 -10.87710 -10.67502 -10.50646 -9.36685 -8.22393 -6.35068 1.33290 1.35628 1.46983 1.77023 2.33475 2.52534 3.06895 3.51154 3.54737 3.81527 4.09383 4.29631 4.33986 4.46257 4.59522 4.64096 4.69424 4.79510 4.83400 5.00009 5.02485 5.10144 5.15782 5.21581 5.34839 5.39105 5.44992 5.55794 5.61938 5.82355 5.96287 6.07303 6.60874 6.74659 7.27647 7.48354 8.84903 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.011541 C = 0.009650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.434431 B = 2425.645626 C = 2900.842375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.271 3.729 10 N -0.601 5.601 11 C 0.484 3.516 12 O -0.608 6.608 13 C -0.138 4.138 14 C -0.076 4.076 15 H 0.142 0.858 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.112 4.112 20 C 0.133 3.867 21 H 0.070 0.930 22 H 0.265 0.735 23 H 0.024 0.976 24 H -0.011 1.011 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.026 0.974 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 -10.671 -8.292 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.151 3.849 10 N -0.333 5.333 11 C 0.273 3.727 12 O -0.492 6.492 13 C -0.178 4.178 14 C -0.095 4.095 15 H 0.160 0.840 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.164 4.164 19 C -0.149 4.149 20 C 0.030 3.970 21 H 0.088 0.912 22 H 0.074 0.926 23 H 0.042 0.958 24 H 0.007 0.993 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.932 -10.341 -7.758 16.930 hybrid contribution -0.501 1.480 0.528 1.649 sum 10.431 -8.862 -7.229 15.479 Atomic orbital electron populations 1.70062 1.07499 1.27894 1.51618 1.25800 0.95690 1.02785 0.94847 0.85472 0.78982 0.79206 0.77860 1.19024 1.19517 1.21010 1.21740 0.93415 0.91152 1.49992 0.91994 1.18597 0.87497 0.83711 0.95117 1.48863 1.43506 1.33341 1.07546 1.22055 0.82354 0.84211 0.84058 1.90600 1.65584 1.69594 1.23391 1.22694 0.98927 0.97836 0.98362 1.21753 0.93132 1.00264 0.94313 0.84049 1.21226 0.97539 0.98376 0.97723 1.21386 0.96774 0.98131 0.98218 1.21537 0.95279 0.98214 1.01348 1.20985 0.98816 0.97645 0.97495 1.20883 0.96252 0.94482 0.85400 0.91192 0.92558 0.95818 0.99336 0.87418 0.85755 0.88563 0.95552 0.89208 0.91725 0.91986 0.94075 0.88327 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.52 -30.06 8.25 25.60 0.21 -29.84 16 8 H 0.06 3.53 5.65 -2.91 -0.02 3.52 16 9 C 0.27 14.94 4.89 85.63 0.42 15.36 16 10 N -0.60 -26.56 2.87 -806.92 -2.32 -28.87 16 11 C 0.48 21.34 7.98 87.89 0.70 22.04 16 12 O -0.61 -33.60 17.64 -3.04 -0.05 -33.65 16 13 C -0.14 -3.80 6.18 30.86 0.19 -3.61 16 14 C -0.08 -1.72 3.38 -10.67 -0.04 -1.76 16 15 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.11 -2.54 5.03 29.95 0.15 -2.39 16 17 C -0.11 -2.40 5.94 30.42 0.18 -2.22 16 18 C -0.13 -3.93 5.92 30.47 0.18 -3.75 16 19 C -0.11 -3.45 4.95 29.60 0.15 -3.31 16 20 C 0.13 4.13 2.96 43.97 0.13 4.26 16 21 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.02 1.33 7.33 -2.39 -0.02 1.31 16 24 H -0.01 -0.73 7.96 -2.39 -0.02 -0.75 16 25 H 0.11 2.71 7.77 -2.39 -0.02 2.69 16 26 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.79 7.76 -2.39 -0.02 0.78 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.04 1.67 5.30 -2.39 -0.01 1.65 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.69 6.40 -2.39 -0.02 1.68 16 Total: -1.00 -75.08 267.19 3.76 -71.32 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.08 Total: 4.52 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 2.74 Total: -4.34 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.03 Total: -85.26 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.05 Total: -33.65 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.08 3.76 -71.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306192982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.500 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds