Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47246 * 270.00077 * 3 2 1 5 5 H 1.48502 * 109.47227 * 30.00010 * 3 2 1 6 6 H 1.48502 * 109.46862 * 150.00018 * 3 2 1 7 7 C 1.37880 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47121 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47102 * 180.02562 * 10 9 7 12 12 C 1.37032 * 123.23043 * 269.70585 * 11 10 9 13 13 O 1.21283 * 123.37225 * 0.24493 * 12 11 10 14 14 C 1.52388 * 113.25296 * 180.26937 * 12 11 10 15 15 C 1.53509 * 107.44979 * 58.16590 * 14 12 11 16 16 C 1.53018 * 109.51962 * 304.92598 * 15 14 12 17 17 C 1.47986 * 123.23171 * 90.00245 * 11 10 9 18 18 C 1.53319 * 108.04549 * 238.96960 * 17 11 10 19 19 C 1.53519 * 108.12981 * 301.48337 * 14 12 11 20 20 H 0.96996 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47061 * 60.00119 * 9 7 2 22 22 H 1.09000 * 109.47442 * 299.99888 * 9 7 2 23 23 H 1.09001 * 109.47696 * 60.00003 * 10 9 7 24 24 H 1.09010 * 109.47372 * 299.99950 * 10 9 7 25 25 H 1.08999 * 110.95773 * 179.60523 * 14 12 11 26 26 H 1.09002 * 109.46461 * 184.90997 * 15 14 12 27 27 H 1.09002 * 109.45154 * 64.93833 * 15 14 12 28 28 H 1.09004 * 109.41016 * 239.43914 * 16 15 14 29 29 H 1.09004 * 109.35084 * 119.62412 * 16 15 14 30 30 H 1.08998 * 110.52413 * 0.02562 * 17 11 10 31 31 H 1.09002 * 109.41108 * 62.90775 * 18 17 11 32 32 H 1.08997 * 109.41182 * 182.69071 * 18 17 11 33 33 H 1.09002 * 109.45910 * 175.44686 * 19 14 12 34 34 H 1.08995 * 109.46119 * 295.42726 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6367 0.0011 12 6 6.2383 -2.6422 -1.1445 13 8 5.7576 -2.6431 -2.2580 14 6 7.7389 -2.6476 -0.8792 15 6 8.0528 -3.8911 -0.0358 16 6 7.1857 -3.8860 1.2250 17 6 6.2964 -2.6372 1.2396 18 6 7.1853 -1.3881 1.2263 19 6 8.0816 -1.4029 -0.0485 20 1 -0.4849 0.8400 -0.0004 21 1 3.8745 -0.6809 0.8906 22 1 3.8752 -0.6798 -0.8894 23 1 3.6585 -3.1504 -0.8903 24 1 3.6577 -3.1507 0.8897 25 1 8.3000 -2.6588 -1.8137 26 1 9.1054 -3.8818 0.2473 27 1 7.8413 -4.7878 -0.6184 28 1 7.8275 -3.8840 2.1061 29 1 6.5586 -4.7775 1.2357 30 1 5.6513 -2.6380 2.1182 31 1 6.5579 -0.4969 1.2392 32 1 7.8271 -1.3908 2.1073 33 1 9.1371 -1.4267 0.2228 34 1 7.8774 -0.5072 -0.6351 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306899783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -52.556582 kcal Electronic energy + Delta-G solvation = -15875.165708 eV Core-core repulsion = 13385.940434 eV Total energy + Delta-G solvation = -2489.225274 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73585 -36.88610 -34.74351 -32.63084 -30.78905 -30.45504 -29.58712 -25.35681 -22.82743 -22.70300 -21.62689 -20.26558 -17.19202 -16.73828 -16.55232 -16.12591 -15.43950 -14.65443 -14.21397 -13.49643 -13.23668 -13.17363 -12.91733 -12.65650 -12.32787 -12.27261 -12.19714 -11.84699 -11.44465 -11.09354 -10.82600 -10.52269 -10.46791 -10.15759 -10.05172 -9.79208 -9.31755 -9.06085 -8.53831 -8.07888 -6.05021 -4.03500 2.99109 3.32101 3.38486 3.39475 3.41881 4.40963 4.45513 4.56632 4.60703 4.76193 5.13761 5.17769 5.28905 5.30595 5.33870 5.41187 5.55885 5.76040 5.82703 5.88966 5.95213 6.07506 6.09481 6.09653 6.21030 6.39386 6.66130 6.91204 7.24474 7.38401 7.71514 7.78743 8.49591 8.62921 8.98475 9.57267 11.08205 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038989 B = 0.008048 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.979194 B = 3478.391805 C = 3590.520529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.023 4.023 10 C 0.135 3.865 11 N -0.616 5.616 12 C 0.517 3.483 13 O -0.533 6.533 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.133 4.133 17 C 0.139 3.861 18 C -0.135 4.135 19 C -0.109 4.109 20 H 0.263 0.737 21 H 0.016 0.984 22 H 0.015 0.985 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.525 -5.300 4.734 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.061 4.061 10 C 0.014 3.986 11 N -0.350 5.350 12 C 0.304 3.696 13 O -0.409 6.409 14 C -0.135 4.135 15 C -0.146 4.146 16 C -0.171 4.171 17 C 0.035 3.965 18 C -0.173 4.173 19 C -0.147 4.147 20 H 0.073 0.927 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.020 -5.192 4.149 19.207 hybrid contribution 0.273 0.990 0.034 1.027 sum 18.294 -4.203 4.183 19.231 Atomic orbital electron populations 1.69912 1.06244 1.26919 1.50984 1.24979 0.94713 0.99115 0.94416 0.86760 0.80200 0.83595 0.78609 1.20255 1.21362 1.19171 1.20998 0.89046 0.94671 1.51174 0.90847 1.19889 0.97135 0.92519 0.96580 1.21582 0.75174 0.99868 1.01930 1.49359 1.06924 1.73200 1.05498 1.21433 0.88851 0.75226 0.84063 1.90685 1.76574 1.49819 1.23827 1.22008 0.94123 0.96944 1.00452 1.21579 1.00094 0.96882 0.96082 1.22042 0.98404 0.98425 0.98242 1.21532 0.92115 0.94175 0.88673 1.22528 0.98117 0.98712 0.97973 1.22066 0.99617 0.96841 0.96179 0.92689 0.96594 0.96699 0.90806 0.91265 0.88073 0.90851 0.91561 0.90539 0.91175 0.88328 0.90650 0.90711 0.90646 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.43 27.47 -169.99 -4.67 17.77 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.85 16 9 C -0.02 -0.57 4.36 -27.89 -0.12 -0.69 16 10 C 0.13 2.82 5.75 -4.04 -0.02 2.80 16 11 N -0.62 -10.86 2.57 -163.23 -0.42 -11.28 16 12 C 0.52 9.49 6.89 -9.12 -0.06 9.43 16 13 O -0.53 -12.23 17.43 5.56 0.10 -12.13 16 14 C -0.11 -1.46 3.59 -90.40 -0.32 -1.79 16 15 C -0.11 -1.10 5.67 -26.46 -0.15 -1.25 16 16 C -0.13 -1.35 5.83 -26.56 -0.15 -1.50 16 17 C 0.14 1.81 3.69 -66.79 -0.25 1.56 16 18 C -0.13 -1.59 5.96 -25.05 -0.15 -1.74 16 19 C -0.11 -1.23 5.85 -24.95 -0.15 -1.38 16 20 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 21 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 22 H 0.01 0.39 7.57 -51.93 -0.39 0.00 16 23 H 0.07 1.67 7.83 -51.93 -0.41 1.27 16 24 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -33.91 273.31 -7.32 -41.23 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.41 Total: -4.17 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.81 Total: -8.08 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.35 Total: -38.73 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.10 Total: -12.13 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.91 -7.32 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306899783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.329 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds