Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47246 * 270.00077 * 3 2 1 5 5 H 1.48502 * 109.47227 * 30.00010 * 3 2 1 6 6 H 1.48502 * 109.46862 * 150.00018 * 3 2 1 7 7 C 1.37880 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47121 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47102 * 180.02562 * 10 9 7 12 12 C 1.37032 * 123.23043 * 269.70585 * 11 10 9 13 13 O 1.21283 * 123.37225 * 0.24493 * 12 11 10 14 14 C 1.52388 * 113.25296 * 180.26937 * 12 11 10 15 15 C 1.53509 * 107.44979 * 58.16590 * 14 12 11 16 16 C 1.53018 * 109.51962 * 304.92598 * 15 14 12 17 17 C 1.47986 * 123.23171 * 90.00245 * 11 10 9 18 18 C 1.53319 * 108.04549 * 238.96960 * 17 11 10 19 19 C 1.53519 * 108.12981 * 301.48337 * 14 12 11 20 20 H 0.96996 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47061 * 60.00119 * 9 7 2 22 22 H 1.09000 * 109.47442 * 299.99888 * 9 7 2 23 23 H 1.09001 * 109.47696 * 60.00003 * 10 9 7 24 24 H 1.09010 * 109.47372 * 299.99950 * 10 9 7 25 25 H 1.08999 * 110.95773 * 179.60523 * 14 12 11 26 26 H 1.09002 * 109.46461 * 184.90997 * 15 14 12 27 27 H 1.09002 * 109.45154 * 64.93833 * 15 14 12 28 28 H 1.09004 * 109.41016 * 239.43914 * 16 15 14 29 29 H 1.09004 * 109.35084 * 119.62412 * 16 15 14 30 30 H 1.08998 * 110.52413 * 0.02562 * 17 11 10 31 31 H 1.09002 * 109.41108 * 62.90775 * 18 17 11 32 32 H 1.08997 * 109.41182 * 182.69071 * 18 17 11 33 33 H 1.09002 * 109.45910 * 175.44686 * 19 14 12 34 34 H 1.08995 * 109.46119 * 295.42726 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6367 0.0011 12 6 6.2383 -2.6422 -1.1445 13 8 5.7576 -2.6431 -2.2580 14 6 7.7389 -2.6476 -0.8792 15 6 8.0528 -3.8911 -0.0358 16 6 7.1857 -3.8860 1.2250 17 6 6.2964 -2.6372 1.2396 18 6 7.1853 -1.3881 1.2263 19 6 8.0816 -1.4029 -0.0485 20 1 -0.4849 0.8400 -0.0004 21 1 3.8745 -0.6809 0.8906 22 1 3.8752 -0.6798 -0.8894 23 1 3.6585 -3.1504 -0.8903 24 1 3.6577 -3.1507 0.8897 25 1 8.3000 -2.6588 -1.8137 26 1 9.1054 -3.8818 0.2473 27 1 7.8413 -4.7878 -0.6184 28 1 7.8275 -3.8840 2.1061 29 1 6.5586 -4.7775 1.2357 30 1 5.6513 -2.6380 2.1182 31 1 6.5579 -0.4969 1.2392 32 1 7.8271 -1.3908 2.1073 33 1 9.1371 -1.4267 0.2228 34 1 7.8774 -0.5072 -0.6351 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306899783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = -75.246861 kcal Electronic energy + Delta-G solvation = -15876.149632 eV Core-core repulsion = 13385.940434 eV Total energy + Delta-G solvation = -2490.209198 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89984 -38.27353 -36.42980 -34.64791 -32.03089 -31.58245 -30.98959 -27.20988 -24.07694 -23.53235 -23.16996 -21.89287 -19.20890 -17.89608 -17.73796 -17.55481 -16.75004 -16.21437 -15.86107 -15.05846 -14.82181 -14.40870 -14.34180 -14.33268 -13.68460 -13.35522 -13.22936 -12.98772 -12.97277 -12.72992 -12.15602 -12.12614 -11.90083 -11.67014 -11.55830 -11.33657 -11.11647 -10.84833 -10.46079 -9.56774 -8.36949 -6.41888 1.27957 1.30216 1.41465 1.59893 2.06273 2.28879 2.97785 3.39481 3.66450 3.71252 3.77556 4.23123 4.30880 4.37187 4.40907 4.45961 4.49179 4.60269 4.64990 4.77925 4.96908 5.04362 5.09397 5.12396 5.18223 5.22553 5.29147 5.33161 5.38630 5.48819 5.76947 6.17452 6.35118 6.64187 7.19434 7.24236 8.79499 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038989 B = 0.008048 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.979194 B = 3478.391805 C = 3590.520529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.038 0.962 9 C -0.009 4.009 10 C 0.144 3.856 11 N -0.620 5.620 12 C 0.497 3.503 13 O -0.596 6.596 14 C -0.105 4.105 15 C -0.104 4.104 16 C -0.126 4.126 17 C 0.127 3.873 18 C -0.134 4.134 19 C -0.105 4.105 20 H 0.269 0.731 21 H 0.029 0.971 22 H -0.007 1.007 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.180 -4.858 6.733 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.574 4.574 8 H 0.057 0.943 9 C -0.048 4.048 10 C 0.022 3.978 11 N -0.353 5.353 12 C 0.288 3.712 13 O -0.477 6.477 14 C -0.126 4.126 15 C -0.142 4.142 16 C -0.164 4.164 17 C 0.025 3.975 18 C -0.172 4.172 19 C -0.143 4.143 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.012 0.988 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.709 -4.767 6.198 23.074 hybrid contribution -0.940 0.781 -0.597 1.360 sum 20.769 -3.987 5.601 21.877 Atomic orbital electron populations 1.70045 1.08050 1.28310 1.52059 1.25930 0.95635 1.03273 0.93874 0.85688 0.79664 0.78665 0.78787 1.20366 1.19831 1.17065 1.21314 0.91383 0.93595 1.51075 0.94325 1.19710 0.94289 0.94964 0.95825 1.21165 0.78168 0.97188 1.01306 1.49504 1.05591 1.72464 1.07697 1.22680 0.91610 0.73722 0.83171 1.90637 1.78231 1.52596 1.26207 1.22085 0.89126 0.99506 1.01886 1.21650 1.02432 0.94764 0.95305 1.22050 0.98236 0.96187 0.99926 1.22004 0.92361 0.96730 0.86443 1.22558 0.98110 0.96524 1.00018 1.22150 1.01986 0.94887 0.95280 0.92239 0.95322 0.98819 0.93796 0.89603 0.87465 0.86740 0.92366 0.86495 0.91939 0.87840 0.93339 0.86481 0.86269 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.95 46.47 27.47 68.60 1.88 48.36 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.54 -32.36 9.66 25.60 0.25 -32.11 16 8 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 9 C -0.01 -0.48 4.36 29.84 0.13 -0.35 16 10 C 0.14 6.23 5.75 86.38 0.50 6.73 16 11 N -0.62 -21.69 2.57 -787.43 -2.03 -23.71 16 12 C 0.50 18.38 6.89 87.84 0.61 18.98 16 13 O -0.60 -28.65 17.43 -3.04 -0.05 -28.71 16 14 C -0.10 -2.42 3.59 -10.65 -0.04 -2.46 16 15 C -0.10 -1.66 5.67 30.77 0.17 -1.49 16 16 C -0.13 -2.00 5.83 30.70 0.18 -1.82 16 17 C 0.13 2.93 3.69 44.92 0.17 3.09 16 18 C -0.13 -2.62 5.96 31.68 0.19 -2.43 16 19 C -0.11 -1.97 5.85 31.75 0.19 -1.78 16 20 H 0.27 16.00 8.31 -92.71 -0.77 15.22 16 21 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 22 H -0.01 -0.36 7.57 -2.39 -0.02 -0.38 16 23 H 0.04 2.13 7.83 -2.39 -0.02 2.11 16 24 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 25 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 2.27 8.09 -2.39 -0.02 2.26 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.64 273.31 3.90 -74.73 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.00 Total: 2.21 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 2.80 Total: -12.54 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.73 Total: -84.06 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.88 Total: 48.36 kcal Total: -78.64 3.90 -74.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306899783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.512 kcal (2) G-P(sol) polarization free energy of solvation -78.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds