Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 115.55279 * 2 1 4 4 O 1.21276 * 119.99669 * 113.91266 * 3 2 1 5 5 N 1.34774 * 119.99677 * 293.91268 * 3 2 1 6 6 C 1.47423 * 125.64984 * 4.85563 * 5 3 2 7 7 C 1.54907 * 104.83470 * 204.09150 * 6 5 3 8 8 C 1.55161 * 101.58118 * 322.99445 * 7 6 5 9 9 H 1.08996 * 110.71689 * 276.95617 * 8 7 6 10 10 C 1.50698 * 110.72119 * 153.86328 * 8 7 6 11 11 H 1.07998 * 120.00320 * 245.27043 * 10 8 7 12 12 C 1.37880 * 120.00176 * 65.26469 * 10 8 7 13 13 N 1.31518 * 119.99495 * 6.34593 * 12 10 8 14 14 Si 1.86794 * 120.00048 * 186.34555 * 12 10 8 15 15 H 1.48510 * 109.47051 * 94.96968 * 14 12 10 16 16 H 1.48497 * 109.47054 * 214.96747 * 14 12 10 17 17 H 1.48493 * 109.47376 * 334.97290 * 14 12 10 18 18 C 1.47021 * 125.64428 * 184.55420 * 5 3 2 19 19 C 1.53002 * 117.49695 * 214.32610 * 2 1 3 20 20 C 1.53006 * 117.49579 * 145.66843 * 2 1 3 21 21 H 1.08992 * 109.46913 * 59.62928 * 1 2 3 22 22 H 1.09002 * 109.46666 * 299.63333 * 1 2 3 23 23 H 1.08994 * 109.47304 * 179.63545 * 1 2 3 24 24 H 1.09001 * 110.37178 * 322.93513 * 6 5 3 25 25 H 1.09006 * 110.36665 * 85.25570 * 6 5 3 26 26 H 1.09004 * 111.00275 * 81.06878 * 7 6 5 27 27 H 1.08991 * 111.00798 * 204.91845 * 7 6 5 28 28 H 0.97003 * 119.99444 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.88039 * 298.38523 * 18 5 3 30 30 H 1.08996 * 109.88670 * 59.55787 * 18 5 3 31 31 H 1.08999 * 117.49966 * 0.02562 * 19 2 1 32 32 H 1.08994 * 117.49747 * 145.02086 * 19 2 1 33 33 H 1.09004 * 117.49845 * 214.97577 * 20 2 1 34 34 H 1.08997 * 117.50261 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.8257 1.7230 0.9602 5 7 2.0438 2.1716 -1.0670 6 6 1.2092 1.9010 -2.2517 7 6 1.8433 2.7456 -3.3849 8 6 2.2715 4.0246 -2.6179 9 1 1.4319 4.7121 -2.5156 10 6 3.4288 4.6985 -3.3089 11 1 4.3893 4.7588 -2.8190 12 6 3.2614 5.2379 -4.5667 13 7 2.0651 5.2762 -5.1118 14 14 4.7336 5.9141 -5.4964 15 1 5.2699 4.8674 -6.4032 16 1 4.3153 7.0940 -6.2952 17 1 5.7862 6.3185 -4.5301 18 6 2.6982 3.4769 -1.2395 19 6 2.2364 -1.1208 -0.7653 20 6 2.2364 -1.1208 0.7655 21 1 -0.3633 0.5195 -0.8866 22 1 -0.3633 0.5081 0.8933 23 1 -0.3633 -1.0276 -0.0065 24 1 1.2418 0.8412 -2.5048 25 1 0.1817 2.2175 -2.0722 26 1 2.7082 2.2387 -3.8129 27 1 1.1089 2.9797 -4.1555 28 1 1.9474 5.6554 -5.9968 29 1 2.3777 4.1591 -0.4521 30 1 3.7809 3.3556 -1.2098 31 1 1.6112 -1.8579 -1.2691 32 1 3.1714 -0.8749 -1.2685 33 1 3.1715 -0.8748 1.2686 34 1 1.6112 -1.8578 1.2694 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307208329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -20.262204 kcal Electronic energy + Delta-G solvation = -15564.552880 eV Core-core repulsion = 13076.727996 eV Total energy + Delta-G solvation = -2487.824885 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85336 -37.26732 -36.12289 -33.00926 -30.38265 -28.83482 -28.18813 -25.29049 -23.25419 -22.40514 -21.22465 -19.64625 -18.28776 -16.73371 -16.34175 -15.40053 -15.00288 -14.72933 -14.49949 -13.30324 -13.05353 -12.92843 -12.58774 -12.57286 -12.30707 -11.77598 -11.51942 -11.34908 -11.28641 -11.06158 -10.77450 -10.49209 -10.45638 -9.97017 -9.77233 -9.50339 -9.23438 -9.00912 -8.48566 -7.97624 -6.12665 -4.14603 2.98727 3.26379 3.33916 3.37178 3.46881 3.84622 4.37971 4.66847 4.84518 4.89020 5.06428 5.21146 5.61620 5.62348 5.65735 5.72914 5.77566 5.89323 5.91635 6.03353 6.09844 6.14675 6.29659 6.33007 6.64191 6.84666 6.98148 7.09486 7.40785 7.70418 7.86224 8.15503 8.27631 8.65718 8.87116 9.49759 10.97644 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048738 B = 0.006701 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.359810 B = 4177.203748 C = 4314.977825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.154 4.154 3 C 0.555 3.445 4 O -0.555 6.555 5 N -0.604 5.604 6 C 0.094 3.906 7 C -0.112 4.112 8 C 0.044 3.956 9 H 0.043 0.957 10 C -0.515 4.515 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.110 3.890 19 C -0.160 4.160 20 C -0.148 4.148 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -11.008 4.789 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.157 4.157 3 C 0.343 3.657 4 O -0.434 6.434 5 N -0.335 5.335 6 C -0.028 4.028 7 C -0.151 4.151 8 C 0.025 3.975 9 H 0.061 0.939 10 C -0.554 4.554 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.526 5.526 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.011 4.011 19 C -0.197 4.197 20 C -0.186 4.186 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.555 -10.777 5.190 12.478 hybrid contribution 0.684 0.401 -0.680 1.045 sum -2.871 -10.376 4.509 11.672 Atomic orbital electron populations 1.21310 0.90400 1.02276 1.02817 1.21380 0.96061 0.89702 1.08549 1.19125 0.80407 0.84626 0.81586 1.90645 1.42931 1.75698 1.34094 1.48636 1.46326 1.20419 1.18158 1.22559 0.94065 0.99815 0.86379 1.22780 0.99905 0.96626 0.95781 1.19724 0.97376 0.92684 0.87762 0.93851 1.21034 0.96167 1.36859 1.01290 0.92264 1.24947 0.95747 0.95351 0.97604 1.69960 1.21004 1.45355 1.16270 0.86563 0.82928 0.78518 0.79949 1.20661 1.21200 1.19782 1.22357 0.96967 0.81907 0.99902 1.23073 1.02369 0.99411 0.94840 1.22992 1.02567 0.98782 0.94238 0.91299 0.91929 0.91784 0.91884 0.92340 0.92197 0.90194 0.92882 0.93246 0.92163 0.88034 0.88439 0.88070 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.56 37.16 0.36 -0.95 16 2 C -0.15 -2.22 1.59 -155.65 -0.25 -2.46 16 3 C 0.56 10.66 7.11 -10.98 -0.08 10.58 16 4 O -0.55 -12.54 17.04 5.56 0.09 -12.45 16 5 N -0.60 -11.88 3.33 -170.51 -0.57 -12.45 16 6 C 0.09 1.66 5.43 -2.53 -0.01 1.65 16 7 C -0.11 -2.40 6.00 -24.58 -0.15 -2.54 16 8 C 0.04 1.05 2.75 -89.93 -0.25 0.80 16 9 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.52 -13.71 8.47 -34.44 -0.29 -14.00 16 11 H 0.06 1.58 7.55 -52.49 -0.40 1.18 16 12 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 13 N -0.89 -24.41 12.70 55.43 0.70 -23.71 16 14 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 18 C 0.11 2.44 6.47 -3.06 -0.02 2.42 16 19 C -0.16 -1.94 9.62 -26.69 -0.26 -2.20 16 20 C -0.15 -1.85 9.77 -26.69 -0.26 -2.11 16 21 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 24 H 0.06 0.96 7.25 -51.93 -0.38 0.58 16 25 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 26 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 27 H 0.08 1.78 7.88 -51.93 -0.41 1.37 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.40 7.64 -51.93 -0.40 1.00 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.10 1.39 8.01 -51.93 -0.42 0.98 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 281.52 15.07 4.24 4.24 Total: -1.00 -29.43 281.52 -7.08 -36.51 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.22 Total: -0.72 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.30 Total: -7.16 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.14 Total: -36.16 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.43 -7.08 -36.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307208329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.248 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds