Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 115.55279 * 2 1 4 4 O 1.21276 * 119.99669 * 113.91266 * 3 2 1 5 5 N 1.34774 * 119.99677 * 293.91268 * 3 2 1 6 6 C 1.47423 * 125.64984 * 4.85563 * 5 3 2 7 7 C 1.54907 * 104.83470 * 204.09150 * 6 5 3 8 8 C 1.55161 * 101.58118 * 322.99445 * 7 6 5 9 9 H 1.08996 * 110.71689 * 276.95617 * 8 7 6 10 10 C 1.50698 * 110.72119 * 153.86328 * 8 7 6 11 11 H 1.07998 * 120.00320 * 245.27043 * 10 8 7 12 12 C 1.37880 * 120.00176 * 65.26469 * 10 8 7 13 13 N 1.31518 * 119.99495 * 6.34593 * 12 10 8 14 14 Si 1.86794 * 120.00048 * 186.34555 * 12 10 8 15 15 H 1.48510 * 109.47051 * 94.96968 * 14 12 10 16 16 H 1.48497 * 109.47054 * 214.96747 * 14 12 10 17 17 H 1.48493 * 109.47376 * 334.97290 * 14 12 10 18 18 C 1.47021 * 125.64428 * 184.55420 * 5 3 2 19 19 C 1.53002 * 117.49695 * 214.32610 * 2 1 3 20 20 C 1.53006 * 117.49579 * 145.66843 * 2 1 3 21 21 H 1.08992 * 109.46913 * 59.62928 * 1 2 3 22 22 H 1.09002 * 109.46666 * 299.63333 * 1 2 3 23 23 H 1.08994 * 109.47304 * 179.63545 * 1 2 3 24 24 H 1.09001 * 110.37178 * 322.93513 * 6 5 3 25 25 H 1.09006 * 110.36665 * 85.25570 * 6 5 3 26 26 H 1.09004 * 111.00275 * 81.06878 * 7 6 5 27 27 H 1.08991 * 111.00798 * 204.91845 * 7 6 5 28 28 H 0.97003 * 119.99444 * 180.02562 * 13 12 10 29 29 H 1.08999 * 109.88039 * 298.38523 * 18 5 3 30 30 H 1.08996 * 109.88670 * 59.55787 * 18 5 3 31 31 H 1.08999 * 117.49966 * 0.02562 * 19 2 1 32 32 H 1.08994 * 117.49747 * 145.02086 * 19 2 1 33 33 H 1.09004 * 117.49845 * 214.97577 * 20 2 1 34 34 H 1.08997 * 117.50261 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 2.8257 1.7230 0.9602 5 7 2.0438 2.1716 -1.0670 6 6 1.2092 1.9010 -2.2517 7 6 1.8433 2.7456 -3.3849 8 6 2.2715 4.0246 -2.6179 9 1 1.4319 4.7121 -2.5156 10 6 3.4288 4.6985 -3.3089 11 1 4.3893 4.7588 -2.8190 12 6 3.2614 5.2379 -4.5667 13 7 2.0651 5.2762 -5.1118 14 14 4.7336 5.9141 -5.4964 15 1 5.2699 4.8674 -6.4032 16 1 4.3153 7.0940 -6.2952 17 1 5.7862 6.3185 -4.5301 18 6 2.6982 3.4769 -1.2395 19 6 2.2364 -1.1208 -0.7653 20 6 2.2364 -1.1208 0.7655 21 1 -0.3633 0.5195 -0.8866 22 1 -0.3633 0.5081 0.8933 23 1 -0.3633 -1.0276 -0.0065 24 1 1.2418 0.8412 -2.5048 25 1 0.1817 2.2175 -2.0722 26 1 2.7082 2.2387 -3.8129 27 1 1.1089 2.9797 -4.1555 28 1 1.9474 5.6554 -5.9968 29 1 2.3777 4.1591 -0.4521 30 1 3.7809 3.3556 -1.2098 31 1 1.6112 -1.8579 -1.2691 32 1 3.1714 -0.8749 -1.2685 33 1 3.1715 -0.8748 1.2686 34 1 1.6112 -1.8578 1.2694 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307208329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -37.703440 kcal Electronic energy + Delta-G solvation = -15565.309189 eV Core-core repulsion = 13076.727996 eV Total energy + Delta-G solvation = -2488.581193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30273 -38.77190 -37.51782 -34.96738 -32.17729 -30.24382 -29.44891 -27.14139 -24.86512 -23.35321 -22.68168 -21.47477 -19.73322 -18.61810 -17.75051 -16.99021 -16.54964 -16.46082 -15.91121 -14.72274 -14.51679 -14.36823 -14.12449 -14.02708 -13.29659 -13.24869 -13.12794 -12.99808 -12.95098 -12.63768 -12.41753 -12.30615 -11.63841 -11.47556 -11.40494 -10.98941 -10.94557 -10.70760 -10.52167 -9.62181 -8.18715 -6.26895 1.41099 1.43220 1.52870 1.53198 2.01592 2.42699 2.77909 3.13263 3.49788 3.73293 3.92759 4.04485 4.05247 4.27020 4.41869 4.44301 4.64031 4.72472 4.76236 4.80034 4.88099 4.93890 4.97511 5.08969 5.21944 5.24285 5.27334 5.34361 5.54611 5.73941 5.83920 6.25896 6.62336 6.78439 7.12330 7.40216 8.91218 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048738 B = 0.006701 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.359810 B = 4177.203748 C = 4314.977825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.171 4.171 3 C 0.547 3.453 4 O -0.598 6.598 5 N -0.608 5.608 6 C 0.108 3.892 7 C -0.103 4.103 8 C 0.039 3.961 9 H 0.019 0.981 10 C -0.537 4.537 11 H 0.049 0.951 12 C 0.024 3.976 13 N -0.911 5.911 14 Si 0.953 3.047 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.119 3.881 19 C -0.143 4.143 20 C -0.143 4.143 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.265 0.735 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -13.128 4.343 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.174 4.174 3 C 0.338 3.662 4 O -0.480 6.480 5 N -0.339 5.339 6 C -0.014 4.014 7 C -0.142 4.142 8 C 0.020 3.980 9 H 0.037 0.963 10 C -0.575 4.575 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.550 5.550 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.004 4.004 19 C -0.180 4.180 20 C -0.180 4.180 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.365 -12.914 4.736 14.431 hybrid contribution 0.960 1.095 -0.497 1.539 sum -3.405 -11.818 4.239 13.009 Atomic orbital electron populations 1.21340 0.88022 1.04429 1.02496 1.21415 0.97557 0.86999 1.11462 1.20124 0.79615 0.86111 0.80375 1.90614 1.44884 1.76944 1.35597 1.48713 1.46456 1.19507 1.19207 1.22554 0.93946 1.01069 0.83824 1.22563 0.99391 0.95779 0.96480 1.19624 0.95839 0.93457 0.89054 0.96291 1.21298 0.96550 1.37714 1.01980 0.93296 1.25618 0.98181 0.95586 0.98219 1.70042 1.22450 1.45855 1.16605 0.85625 0.79826 0.78082 0.78635 1.19863 1.20648 1.19836 1.22014 0.96078 0.83544 0.98717 1.23211 1.01788 0.98275 0.94747 1.23111 1.01888 0.98183 0.94802 0.91297 0.92676 0.88342 0.88431 0.90584 0.93283 0.91205 0.92637 0.94092 0.93967 0.84435 0.89922 0.90224 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.56 71.98 0.69 -1.41 16 2 C -0.17 -4.47 1.59 -52.92 -0.08 -4.56 16 3 C 0.55 20.73 7.11 87.66 0.62 21.35 16 4 O -0.60 -27.55 17.04 -3.02 -0.05 -27.60 16 5 N -0.61 -23.73 3.33 -811.77 -2.70 -26.43 16 6 C 0.11 3.60 5.43 86.85 0.47 4.07 16 7 C -0.10 -4.41 6.00 31.99 0.19 -4.21 16 8 C 0.04 1.94 2.75 -10.35 -0.03 1.91 16 9 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.54 -29.30 8.47 25.60 0.22 -29.09 16 11 H 0.05 2.70 7.55 -2.91 -0.02 2.68 16 12 C 0.02 1.30 5.31 84.65 0.45 1.75 16 13 N -0.91 -50.43 12.70 21.45 0.27 -50.16 16 14 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 C 0.12 5.46 6.47 86.73 0.56 6.02 16 19 C -0.14 -2.96 9.62 30.62 0.29 -2.66 16 20 C -0.14 -3.14 9.77 30.62 0.30 -2.84 16 21 H 0.07 1.36 6.20 -2.39 -0.01 1.34 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.10 1.30 8.11 -2.39 -0.02 1.28 16 24 H 0.10 2.63 7.25 -2.39 -0.02 2.61 16 25 H 0.08 2.32 7.66 -2.38 -0.02 2.30 16 26 H 0.05 2.16 8.04 -2.38 -0.02 2.14 16 27 H 0.07 3.10 7.88 -2.39 -0.02 3.08 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 2.05 7.64 -2.39 -0.02 2.03 16 31 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 34 H 0.13 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -65.10 281.52 4.30 -60.81 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.07 Total: 8.29 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.68 Total: -9.66 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.43 Total: -76.59 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -65.10 4.30 -60.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307208329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.103 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds