Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48502 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47212 * 300.00111 * 3 2 1 6 6 H 1.48505 * 109.47039 * 60.00331 * 3 2 1 7 7 C 1.40046 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00318 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99871 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00355 * 180.02562 * 9 7 2 12 12 C 1.47595 * 125.76413 * 0.02562 * 11 9 7 13 13 C 1.55451 * 104.89399 * 204.01006 * 12 11 9 14 14 C 1.55283 * 101.42011 * 323.32374 * 13 12 11 15 15 C 1.46434 * 125.77034 * 179.97438 * 11 9 7 16 16 C 1.53722 * 110.63074 * 299.30238 * 15 11 9 17 17 C 1.55009 * 104.07183 * 97.70119 * 16 15 11 18 18 C 1.54941 * 102.81978 * 37.46150 * 17 16 15 19 19 C 1.53349 * 110.82621 * 58.01836 * 15 11 9 20 20 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.36608 * 322.84861 * 12 11 9 22 22 H 1.09003 * 110.36546 * 85.05214 * 12 11 9 23 23 H 1.09000 * 111.18656 * 205.27123 * 13 12 11 24 24 H 1.09008 * 111.01019 * 81.29474 * 13 12 11 25 25 H 1.09002 * 110.74911 * 276.63182 * 14 13 12 26 26 H 1.09002 * 110.74816 * 153.46061 * 14 13 12 27 27 H 1.09006 * 110.51288 * 216.34848 * 16 15 11 28 28 H 1.08999 * 110.51476 * 339.05356 * 16 15 11 29 29 H 1.09003 * 110.74384 * 279.12457 * 17 16 15 30 30 H 1.09000 * 110.74378 * 155.79412 * 17 16 15 31 31 H 1.09006 * 110.48075 * 203.66980 * 18 17 16 32 32 H 1.08999 * 110.48973 * 81.02852 * 18 17 16 33 33 H 1.08999 * 110.07392 * 358.23656 * 19 15 11 34 34 H 1.09008 * 110.06947 * 119.71333 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9488 -3.6478 -0.0017 12 6 3.4173 -3.7962 -0.0001 13 6 3.6776 -5.2013 -0.6120 14 6 2.4885 -6.0143 -0.0320 15 6 1.3477 -4.9831 -0.0022 16 6 0.4828 -5.1882 1.2520 17 6 -0.9595 -4.8912 0.7679 18 6 -0.9721 -5.4883 -0.6617 19 6 0.4321 -5.1684 -1.2183 20 1 -0.4850 0.8401 0.0004 21 1 3.8773 -3.0235 -0.6162 22 1 3.8024 -3.7473 1.0185 23 1 4.6306 -5.6079 -0.2736 24 1 3.6335 -5.1677 -1.7007 25 1 2.7160 -6.3671 0.9739 26 1 2.2370 -6.8499 -0.6852 27 1 0.5625 -6.2158 1.6070 28 1 0.7743 -4.4889 2.0356 29 1 -1.1437 -3.8172 0.7394 30 1 -1.6905 -5.3926 1.4022 31 1 -1.7410 -5.0096 -1.2682 32 1 -1.1309 -6.5660 -0.6237 33 1 0.4014 -4.2513 -1.8067 34 1 0.7892 -5.9949 -1.8329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307351683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -44.063631 kcal Electronic energy + Delta-G solvation = -16326.670760 eV Core-core repulsion = 13837.813768 eV Total energy + Delta-G solvation = -2488.856992 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50123 -35.81570 -34.72067 -32.43606 -30.31554 -28.24658 -27.98401 -26.11473 -23.33761 -21.40001 -20.67085 -19.71365 -17.74266 -16.33714 -15.56180 -15.44393 -14.42027 -13.99043 -13.67189 -13.42276 -13.04029 -12.56942 -12.20788 -12.13357 -11.54782 -11.25643 -11.16224 -10.81022 -10.69170 -10.46620 -10.36625 -10.29408 -10.24237 -10.04946 -9.93968 -9.79157 -9.65956 -8.82943 -7.42280 -7.06690 -6.15608 -4.60169 3.13218 3.21818 3.25857 4.10547 4.58607 4.62345 5.10061 5.21534 5.23499 5.56562 5.59083 5.73672 5.86142 5.94951 6.07005 6.12303 6.15324 6.29735 6.36567 6.42785 6.48472 6.53333 6.61620 6.70168 6.72146 6.75517 6.97756 7.10774 7.44134 7.51620 7.58059 8.21494 8.51962 9.05981 9.59436 10.62783 10.84959 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.010501 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.408071 B = 2665.744199 C = 3250.692893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.573 3.427 10 O -0.561 6.561 11 N -0.633 5.633 12 C 0.117 3.883 13 C -0.135 4.135 14 C -0.121 4.121 15 C 0.169 3.831 16 C -0.118 4.118 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.117 4.117 20 H 0.266 0.734 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -8.778 -0.288 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.380 3.620 10 O -0.443 6.443 11 N -0.372 5.372 12 C -0.008 4.008 13 C -0.174 4.174 14 C -0.159 4.159 15 C 0.082 3.918 16 C -0.156 4.156 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.156 4.156 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.753 -8.564 -0.290 9.354 hybrid contribution 0.619 0.762 0.009 0.982 sum 4.372 -7.802 -0.281 8.947 Atomic orbital electron populations 1.70025 1.06916 1.27018 1.35721 1.25684 0.94597 1.00117 0.92685 0.86371 0.80555 0.82011 0.78165 1.18840 1.20229 1.20226 1.20955 0.93567 0.89194 1.54019 0.91473 1.17937 0.86801 0.81047 0.76233 1.90465 1.13483 1.85562 1.54838 1.48745 1.04392 1.04122 1.79934 1.22000 0.84440 0.95431 0.98913 1.22902 0.97625 0.96380 1.00461 1.22713 0.95327 0.97153 1.00754 1.20826 0.92271 0.84549 0.94155 1.22564 0.96390 0.99134 0.97546 1.22799 0.94942 1.04873 0.94253 1.22184 0.96972 0.98183 0.97550 1.22410 0.94843 1.00921 0.97377 0.92277 0.91467 0.93701 0.91307 0.91385 0.91499 0.91283 0.93060 0.91919 0.86899 0.94159 0.92545 0.93543 0.90938 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.69 11.83 55.55 0.66 -22.03 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 3 Si 0.90 20.21 29.56 -169.99 -5.02 15.18 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.20 8.99 -35.63 -0.32 -15.52 16 8 H 0.07 1.77 6.65 -52.49 -0.35 1.42 16 9 C 0.57 16.03 7.08 -12.99 -0.09 15.94 16 10 O -0.56 -17.08 11.00 5.20 0.06 -17.02 16 11 N -0.63 -14.47 2.76 -157.06 -0.43 -14.90 16 12 C 0.12 2.20 6.55 -2.14 -0.01 2.18 16 13 C -0.14 -2.01 7.13 -24.22 -0.17 -2.19 16 14 C -0.12 -1.86 5.86 -25.10 -0.15 -2.01 16 15 C 0.17 3.30 0.84 -130.88 -0.11 3.19 16 16 C -0.12 -2.30 5.59 -25.29 -0.14 -2.44 16 17 C -0.13 -2.69 6.34 -24.65 -0.16 -2.84 16 18 C -0.11 -2.07 6.84 -24.97 -0.17 -2.24 16 19 C -0.12 -2.28 5.68 -25.81 -0.15 -2.43 16 20 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 21 H 0.07 1.29 7.16 -51.93 -0.37 0.92 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 26 H 0.07 0.94 7.32 -51.93 -0.38 0.56 16 27 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 28 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 29 H 0.11 2.84 5.33 -51.93 -0.28 2.57 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.68 7.21 -51.93 -0.37 1.31 16 34 H 0.05 0.82 7.22 -51.92 -0.37 0.45 16 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -31.48 264.46 -7.35 -38.82 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.02 Total: 1.97 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.57 Total: -6.00 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.22 Total: -36.93 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.06 Total: -17.02 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.48 -7.35 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307351683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.243 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds