Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48502 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47212 * 300.00111 * 3 2 1 6 6 H 1.48505 * 109.47039 * 60.00331 * 3 2 1 7 7 C 1.40046 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00318 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99871 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00355 * 180.02562 * 9 7 2 12 12 C 1.47595 * 125.76413 * 0.02562 * 11 9 7 13 13 C 1.55451 * 104.89399 * 204.01006 * 12 11 9 14 14 C 1.55283 * 101.42011 * 323.32374 * 13 12 11 15 15 C 1.46434 * 125.77034 * 179.97438 * 11 9 7 16 16 C 1.53722 * 110.63074 * 299.30238 * 15 11 9 17 17 C 1.55009 * 104.07183 * 97.70119 * 16 15 11 18 18 C 1.54941 * 102.81978 * 37.46150 * 17 16 15 19 19 C 1.53349 * 110.82621 * 58.01836 * 15 11 9 20 20 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.36608 * 322.84861 * 12 11 9 22 22 H 1.09003 * 110.36546 * 85.05214 * 12 11 9 23 23 H 1.09000 * 111.18656 * 205.27123 * 13 12 11 24 24 H 1.09008 * 111.01019 * 81.29474 * 13 12 11 25 25 H 1.09002 * 110.74911 * 276.63182 * 14 13 12 26 26 H 1.09002 * 110.74816 * 153.46061 * 14 13 12 27 27 H 1.09006 * 110.51288 * 216.34848 * 16 15 11 28 28 H 1.08999 * 110.51476 * 339.05356 * 16 15 11 29 29 H 1.09003 * 110.74384 * 279.12457 * 17 16 15 30 30 H 1.09000 * 110.74378 * 155.79412 * 17 16 15 31 31 H 1.09006 * 110.48075 * 203.66980 * 18 17 16 32 32 H 1.08999 * 110.48973 * 81.02852 * 18 17 16 33 33 H 1.08999 * 110.07392 * 358.23656 * 19 15 11 34 34 H 1.09008 * 110.06947 * 119.71333 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9488 -3.6478 -0.0017 12 6 3.4173 -3.7962 -0.0001 13 6 3.6776 -5.2013 -0.6120 14 6 2.4885 -6.0143 -0.0320 15 6 1.3477 -4.9831 -0.0022 16 6 0.4828 -5.1882 1.2520 17 6 -0.9595 -4.8912 0.7679 18 6 -0.9721 -5.4883 -0.6617 19 6 0.4321 -5.1684 -1.2183 20 1 -0.4850 0.8401 0.0004 21 1 3.8773 -3.0235 -0.6162 22 1 3.8024 -3.7473 1.0185 23 1 4.6306 -5.6079 -0.2736 24 1 3.6335 -5.1677 -1.7007 25 1 2.7160 -6.3671 0.9739 26 1 2.2370 -6.8499 -0.6852 27 1 0.5625 -6.2158 1.6070 28 1 0.7743 -4.4889 2.0356 29 1 -1.1437 -3.8172 0.7394 30 1 -1.6905 -5.3926 1.4022 31 1 -1.7410 -5.0096 -1.2682 32 1 -1.1309 -6.5660 -0.6237 33 1 0.4014 -4.2513 -1.8067 34 1 0.7892 -5.9949 -1.8329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307351683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -64.241888 kcal Electronic energy + Delta-G solvation = -16327.545755 eV Core-core repulsion = 13837.813768 eV Total energy + Delta-G solvation = -2489.731987 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10580 -37.80747 -36.26235 -34.56637 -31.96412 -29.74529 -29.54890 -28.18239 -24.88981 -22.98555 -22.30806 -21.26376 -19.50611 -18.19155 -17.54332 -16.96719 -16.23910 -15.54167 -15.37269 -15.08881 -14.64280 -14.16525 -13.77994 -13.55346 -13.33781 -13.11882 -12.84413 -12.56419 -12.35356 -12.18264 -11.93227 -11.88982 -11.86244 -11.61797 -11.46142 -11.22408 -11.18373 -10.91912 -9.54251 -8.89027 -8.24142 -6.79206 1.36539 1.36642 1.53516 2.23041 2.51433 2.95876 3.59479 3.71403 3.84338 3.92813 4.12323 4.30217 4.30429 4.61064 4.65052 4.67280 4.83436 4.83938 4.94470 4.97060 5.02974 5.11239 5.13147 5.20253 5.23784 5.34393 5.39562 5.46195 5.54244 5.77016 5.86773 6.16177 6.63075 6.91605 7.62897 8.56523 8.77856 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.010501 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.408071 B = 2665.744199 C = 3250.692893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.555 3.445 10 O -0.599 6.599 11 N -0.642 5.642 12 C 0.105 3.895 13 C -0.120 4.120 14 C -0.111 4.111 15 C 0.153 3.847 16 C -0.113 4.113 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.115 4.115 20 H 0.271 0.729 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.020 0.980 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -10.813 -0.348 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.608 4.608 8 H 0.095 0.905 9 C 0.360 3.640 10 O -0.484 6.484 11 N -0.379 5.379 12 C -0.019 4.019 13 C -0.158 4.158 14 C -0.149 4.149 15 C 0.067 3.933 16 C -0.151 4.151 17 C -0.174 4.174 18 C -0.143 4.143 19 C -0.153 4.153 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.126 0.874 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.906 -10.645 -0.351 12.178 hybrid contribution -0.067 1.340 0.044 1.342 sum 5.839 -9.305 -0.308 10.990 Atomic orbital electron populations 1.70190 1.09192 1.28468 1.37186 1.26845 0.95483 1.04481 0.91447 0.85091 0.79370 0.76087 0.78499 1.17340 1.19386 1.19406 1.21441 0.94280 0.90356 1.54738 0.90468 1.18196 0.86717 0.82867 0.76173 1.90461 1.14995 1.86806 1.56164 1.48575 1.06434 1.04374 1.78486 1.22262 0.81883 0.98192 0.99519 1.22865 0.99403 0.93120 1.00382 1.22722 0.93044 0.96387 1.02708 1.21221 0.94083 0.84120 0.93884 1.22556 0.95413 1.00451 0.96686 1.22678 0.96595 1.01664 0.96416 1.22181 0.96091 1.00346 0.95658 1.22394 0.95791 0.99760 0.97369 0.91873 0.92734 0.93177 0.87430 0.91162 0.89661 0.88242 0.88902 0.95327 0.92619 0.91925 0.94230 0.89259 0.96051 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.94 11.83 21.84 0.26 -50.68 16 2 C 0.03 1.83 5.50 85.30 0.47 2.30 16 3 Si 0.99 42.35 29.56 68.60 2.03 44.38 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.57 -33.37 8.99 24.83 0.22 -33.15 16 8 H 0.08 4.17 6.65 -2.91 -0.02 4.15 16 9 C 0.56 32.63 7.08 86.36 0.61 33.25 16 10 O -0.60 -38.99 11.00 -4.30 -0.05 -39.03 16 11 N -0.64 -29.79 2.76 -769.06 -2.12 -31.92 16 12 C 0.10 3.84 6.55 87.01 0.57 4.41 16 13 C -0.12 -3.09 7.13 32.22 0.23 -2.86 16 14 C -0.11 -2.89 5.86 31.65 0.19 -2.70 16 15 C 0.15 5.76 0.84 4.25 0.00 5.76 16 16 C -0.11 -4.29 5.59 31.52 0.18 -4.12 16 17 C -0.14 -5.64 6.34 31.95 0.20 -5.44 16 18 C -0.11 -3.82 6.84 31.73 0.22 -3.61 16 19 C -0.11 -4.38 5.68 31.19 0.18 -4.20 16 20 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 21 H 0.05 2.09 7.16 -2.39 -0.02 2.08 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.08 1.96 7.76 -2.39 -0.02 1.94 16 26 H 0.10 2.06 7.32 -2.39 -0.02 2.05 16 27 H 0.09 2.74 7.75 -2.38 -0.02 2.72 16 28 H 0.03 1.25 8.04 -2.39 -0.02 1.23 16 29 H 0.06 3.00 5.33 -2.39 -0.01 2.99 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16 34 H 0.09 2.59 7.22 -2.38 -0.02 2.58 16 Total: -1.00 -74.89 264.46 4.26 -70.63 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.08 Total: 16.97 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 3.07 Total: -10.35 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.87 Total: -82.60 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.05 Total: -39.03 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.89 4.26 -70.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307351683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.393 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds