Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99485 * 2 1 4 4 H 1.48503 * 109.47243 * 240.00032 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99969 * 3 2 1 7 7 C 1.40045 * 120.00708 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99512 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00355 * 359.71597 * 9 7 2 11 11 N 1.34777 * 119.99803 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00264 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.46671 * 324.99522 * 12 11 9 14 14 C 1.52998 * 109.47232 * 84.99563 * 12 11 9 15 15 C 1.52994 * 109.47045 * 120.00502 * 14 12 11 16 16 C 1.53005 * 109.47125 * 299.99549 * 15 14 12 17 17 C 1.53007 * 109.46704 * 60.00392 * 16 15 14 18 18 C 1.52998 * 109.47252 * 204.99918 * 12 11 9 19 19 C 1.52996 * 109.46932 * 179.97438 * 18 12 11 20 20 C 1.52995 * 109.47178 * 59.99799 * 15 14 12 21 21 H 0.96991 * 120.00684 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 23 23 H 1.09005 * 109.46883 * 240.00559 * 14 12 11 24 24 H 1.09005 * 109.47199 * 0.02562 * 14 12 11 25 25 H 1.09007 * 109.47125 * 179.97438 * 15 14 12 26 26 H 1.08999 * 109.47416 * 300.00725 * 16 15 14 27 27 H 1.08997 * 109.47387 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.46958 * 240.00377 * 17 16 15 29 29 H 1.08993 * 109.47243 * 119.99815 * 17 16 15 30 30 H 1.08997 * 109.47162 * 59.99501 * 18 12 11 31 31 H 1.09001 * 109.46909 * 179.97438 * 19 18 12 32 32 H 1.08994 * 109.47414 * 299.99860 * 19 18 12 33 33 H 1.09003 * 109.47149 * 60.00736 * 20 15 14 34 34 H 1.09005 * 109.47052 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0071 -1.2127 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2753 -2.4804 0.0005 10 8 0.0584 -2.4805 0.0053 11 7 1.9492 -3.6476 0.0005 12 6 1.2169 -4.9164 0.0011 13 1 0.3064 -4.8101 0.5910 14 6 0.8524 -5.2956 -1.4356 15 6 1.4869 -6.6435 -1.7840 16 6 3.0079 -6.5399 -1.6541 17 6 3.3724 -6.1608 -0.2173 18 6 2.0944 -6.0116 0.6106 19 6 1.3293 -7.3365 0.6118 20 6 0.9650 -7.7157 -0.8255 21 1 -0.4851 0.8399 -0.0004 22 1 2.9192 -3.6475 0.0002 23 1 -0.2313 -5.3693 -1.5282 24 1 1.2245 -4.5318 -2.1185 25 1 1.2268 -6.9138 -2.8074 26 1 3.3797 -5.7760 -2.3369 27 1 3.4599 -7.5003 -1.9018 28 1 3.9172 -5.2167 -0.2177 29 1 3.9975 -6.9410 0.2169 30 1 2.3541 -5.7414 1.6341 31 1 1.9546 -8.1168 1.0456 32 1 0.4190 -7.2299 1.2018 33 1 -0.1186 -7.7896 -0.9181 34 1 1.4167 -8.6761 -1.0740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307689727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = -65.601374 kcal Electronic energy + Delta-G solvation = -15876.954631 eV Core-core repulsion = 13387.163692 eV Total energy + Delta-G solvation = -2489.790939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20143 -36.78103 -33.03423 -32.15652 -30.97913 -30.62590 -28.70964 -25.90602 -22.39332 -22.10216 -21.47326 -19.48805 -17.39919 -16.18986 -16.08117 -15.50516 -15.43049 -14.80561 -13.87062 -13.38921 -12.75867 -12.40410 -12.13380 -11.88207 -11.78380 -11.69423 -11.68513 -11.42026 -11.34715 -11.10928 -10.90277 -10.44098 -10.34790 -10.21666 -9.66252 -9.60827 -9.38479 -8.80130 -7.53391 -7.38656 -6.13216 -4.58873 3.18108 3.22824 3.24744 4.14255 4.63769 4.77976 4.82185 4.94026 5.11266 5.49050 5.51115 5.59282 5.62045 5.62787 5.67817 5.78358 5.87588 5.92994 6.08141 6.13256 6.22301 6.25715 6.41092 6.51572 6.55042 6.60122 6.78564 6.85449 6.98307 7.47555 8.01554 8.22361 8.40681 9.07382 9.63481 10.66298 10.86321 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.007095 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.677364 B = 3945.730762 C = 4105.515837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.164 3.836 13 H 0.072 0.928 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.112 4.112 21 H 0.268 0.732 22 H 0.377 0.623 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -12.107 -1.268 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.057 3.943 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.105 4.105 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.112 4.112 19 C -0.147 4.147 20 C -0.149 4.149 21 H 0.079 0.921 22 H 0.210 0.790 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.652 -11.983 -1.256 12.916 hybrid contribution 0.934 0.828 -0.037 1.249 sum 5.586 -11.156 -1.294 12.543 Atomic orbital electron populations 1.70009 1.07011 1.27228 1.35568 1.25689 0.94584 1.00183 0.92667 0.86470 0.79839 0.81234 0.79386 1.19348 1.20599 1.19341 1.20870 0.93484 0.89598 1.54536 0.91652 1.18181 0.87210 0.82516 0.76150 1.90589 1.14094 1.86885 1.54835 1.46296 1.08364 1.04727 1.82254 1.20412 0.95175 0.84025 0.94682 0.90958 1.22068 0.99965 0.95564 0.98397 1.21070 0.95227 0.95873 0.98317 1.21495 0.95654 1.00602 0.96977 1.21493 0.96955 1.01066 0.95390 1.21283 0.95575 0.95124 0.99262 1.21484 0.99951 0.96537 0.96750 1.21543 1.00497 0.97769 0.95133 0.92150 0.79029 0.92400 0.91391 0.91918 0.92075 0.92739 0.91807 0.92538 0.91163 0.92312 0.92001 0.92207 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.98 7.71 -12.99 -0.10 15.88 16 10 O -0.58 -19.00 14.68 5.20 0.08 -18.92 16 11 N -0.76 -17.24 4.82 -55.21 -0.27 -17.51 16 12 C 0.16 3.20 2.41 -67.93 -0.16 3.04 16 13 H 0.07 1.63 7.57 -51.92 -0.39 1.24 16 14 C -0.12 -2.21 5.48 -26.74 -0.15 -2.35 16 15 C -0.09 -1.21 3.19 -90.62 -0.29 -1.50 16 16 C -0.11 -1.44 5.71 -26.72 -0.15 -1.59 16 17 C -0.11 -1.50 5.54 -26.73 -0.15 -1.65 16 18 C -0.09 -1.42 2.88 -90.62 -0.26 -1.68 16 19 C -0.11 -1.42 5.71 -26.71 -0.15 -1.57 16 20 C -0.11 -1.40 5.71 -26.71 -0.15 -1.55 16 21 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 22 H 0.38 7.64 6.85 -40.82 -0.28 7.37 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -33.19 267.92 -7.71 -40.90 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.19 Total: 5.47 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.00 Total: -6.62 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.39 Total: -40.27 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.08 Total: -18.92 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.19 -7.71 -40.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307689727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.703 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds