Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99485 * 2 1 4 4 H 1.48503 * 109.47243 * 240.00032 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99969 * 3 2 1 7 7 C 1.40045 * 120.00708 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99512 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00355 * 359.71597 * 9 7 2 11 11 N 1.34777 * 119.99803 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00264 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.46671 * 324.99522 * 12 11 9 14 14 C 1.52998 * 109.47232 * 84.99563 * 12 11 9 15 15 C 1.52994 * 109.47045 * 120.00502 * 14 12 11 16 16 C 1.53005 * 109.47125 * 299.99549 * 15 14 12 17 17 C 1.53007 * 109.46704 * 60.00392 * 16 15 14 18 18 C 1.52998 * 109.47252 * 204.99918 * 12 11 9 19 19 C 1.52996 * 109.46932 * 179.97438 * 18 12 11 20 20 C 1.52995 * 109.47178 * 59.99799 * 15 14 12 21 21 H 0.96991 * 120.00684 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 23 23 H 1.09005 * 109.46883 * 240.00559 * 14 12 11 24 24 H 1.09005 * 109.47199 * 0.02562 * 14 12 11 25 25 H 1.09007 * 109.47125 * 179.97438 * 15 14 12 26 26 H 1.08999 * 109.47416 * 300.00725 * 16 15 14 27 27 H 1.08997 * 109.47387 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.46958 * 240.00377 * 17 16 15 29 29 H 1.08993 * 109.47243 * 119.99815 * 17 16 15 30 30 H 1.08997 * 109.47162 * 59.99501 * 18 12 11 31 31 H 1.09001 * 109.46909 * 179.97438 * 19 18 12 32 32 H 1.08994 * 109.47414 * 299.99860 * 19 18 12 33 33 H 1.09003 * 109.47149 * 60.00736 * 20 15 14 34 34 H 1.09005 * 109.47052 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0071 -1.2127 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2753 -2.4804 0.0005 10 8 0.0584 -2.4805 0.0053 11 7 1.9492 -3.6476 0.0005 12 6 1.2169 -4.9164 0.0011 13 1 0.3064 -4.8101 0.5910 14 6 0.8524 -5.2956 -1.4356 15 6 1.4869 -6.6435 -1.7840 16 6 3.0079 -6.5399 -1.6541 17 6 3.3724 -6.1608 -0.2173 18 6 2.0944 -6.0116 0.6106 19 6 1.3293 -7.3365 0.6118 20 6 0.9650 -7.7157 -0.8255 21 1 -0.4851 0.8399 -0.0004 22 1 2.9192 -3.6475 0.0002 23 1 -0.2313 -5.3693 -1.5282 24 1 1.2245 -4.5318 -2.1185 25 1 1.2268 -6.9138 -2.8074 26 1 3.3797 -5.7760 -2.3369 27 1 3.4599 -7.5003 -1.9018 28 1 3.9172 -5.2167 -0.2177 29 1 3.9975 -6.9410 0.2169 30 1 2.3541 -5.7414 1.6341 31 1 1.9546 -8.1168 1.0456 32 1 0.4190 -7.2299 1.2018 33 1 -0.1186 -7.7896 -0.9181 34 1 1.4167 -8.6761 -1.0740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307689727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = -88.199311 kcal Electronic energy + Delta-G solvation = -15877.934551 eV Core-core repulsion = 13387.163692 eV Total energy + Delta-G solvation = -2490.770859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52984 -38.87129 -34.98445 -34.27398 -32.23346 -31.67966 -30.42347 -27.99116 -23.67208 -23.44166 -22.75807 -21.45678 -19.37831 -17.61144 -17.43492 -17.32408 -16.88658 -16.35073 -15.62327 -14.91712 -14.65751 -14.26357 -13.56821 -13.11293 -13.08410 -12.93647 -12.90661 -12.87683 -12.86140 -12.72652 -12.67070 -12.53206 -12.06375 -11.57652 -10.96022 -10.84559 -10.81154 -10.63908 -9.82934 -9.38585 -8.28572 -6.85838 1.38348 1.42404 1.53911 2.24221 2.48119 3.14222 3.59758 3.65937 3.78856 3.85185 4.27745 4.35342 4.42743 4.46649 4.55485 4.56130 4.59517 4.63762 4.73953 4.89247 5.15367 5.16315 5.18245 5.30580 5.34744 5.43487 5.46180 5.50888 5.51865 5.60099 5.89647 6.25922 6.37482 6.86424 7.59337 8.51754 8.69027 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.007095 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.677364 B = 3945.730762 C = 4105.515837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.158 3.842 13 H 0.029 0.971 14 C -0.117 4.117 15 C -0.081 4.081 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.107 4.107 20 C -0.109 4.109 21 H 0.274 0.726 22 H 0.391 0.609 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -13.314 -1.418 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.614 4.614 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.402 5.402 12 C 0.053 3.947 13 H 0.048 0.952 14 C -0.156 4.156 15 C -0.099 4.099 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.147 4.147 21 H 0.084 0.916 22 H 0.226 0.774 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.292 -13.246 -1.408 15.186 hybrid contribution 0.081 1.163 0.013 1.166 sum 7.373 -12.083 -1.395 14.224 Atomic orbital electron populations 1.70189 1.09568 1.28931 1.36643 1.26990 0.95524 1.04993 0.91186 0.85073 0.78207 0.74698 0.80300 1.17819 1.19859 1.17770 1.21430 0.94656 0.90322 1.55010 0.89640 1.18589 0.86839 0.84460 0.75870 1.90540 1.16277 1.88013 1.57263 1.45987 1.08993 1.04573 1.80673 1.20593 0.94446 0.84246 0.95436 0.95225 1.21971 0.99108 0.97836 0.96726 1.21058 0.95984 0.93319 0.99578 1.21513 0.94509 1.02061 0.96439 1.21515 0.95908 1.01765 0.95494 1.21246 0.95981 0.94486 0.98909 1.21512 0.99849 0.95776 0.97380 1.21556 1.00593 0.98417 0.94087 0.91630 0.77444 0.94335 0.94368 0.90592 0.93100 0.89430 0.92852 0.89311 0.91563 0.89104 0.92956 0.92603 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.94 11.83 21.83 0.26 -51.68 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 41.93 29.56 68.60 2.03 43.96 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.58 -33.83 9.54 24.83 0.24 -33.59 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.54 32.46 7.71 86.36 0.67 33.13 16 10 O -0.63 -44.08 14.68 -4.32 -0.06 -44.14 16 11 N -0.75 -35.20 4.82 -446.81 -2.15 -37.35 16 12 C 0.16 6.47 2.41 44.99 0.11 6.58 16 13 H 0.03 1.44 7.57 -2.38 -0.02 1.43 16 14 C -0.12 -4.46 5.48 30.59 0.17 -4.29 16 15 C -0.08 -2.13 3.19 -10.80 -0.03 -2.17 16 16 C -0.11 -2.49 5.71 30.60 0.17 -2.31 16 17 C -0.11 -2.62 5.54 30.60 0.17 -2.45 16 18 C -0.09 -2.54 2.88 -10.80 -0.03 -2.58 16 19 C -0.11 -2.51 5.71 30.61 0.17 -2.34 16 20 C -0.11 -2.41 5.71 30.61 0.17 -2.24 16 21 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 22 H 0.39 16.08 6.85 -92.71 -0.63 15.44 16 23 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.04 1.64 7.85 -2.38 -0.02 1.62 16 25 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.38 6.51 -2.39 -0.02 1.37 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -76.68 267.92 2.79 -73.89 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.45 Total: 25.53 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 2.28 Total: -10.20 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -1.90 Total: -89.03 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.06 Total: -44.14 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -76.68 2.79 -73.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307689727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.311 kcal (2) G-P(sol) polarization free energy of solvation -76.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds