Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99932 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 H 1.08995 * 109.46877 * 35.00407 * 12 11 9 14 14 C 1.52997 * 109.47408 * 275.00414 * 12 11 9 15 15 C 1.53004 * 109.47138 * 240.00102 * 14 12 11 16 16 C 1.52998 * 109.47205 * 59.99648 * 15 14 12 17 17 C 1.52997 * 109.47359 * 300.00216 * 16 15 14 18 18 C 1.52998 * 109.46975 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46892 * 299.99915 * 18 17 16 20 20 C 1.52997 * 109.47241 * 60.00248 * 19 18 17 21 21 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 23 23 H 1.09006 * 109.46966 * 359.97438 * 14 12 11 24 24 H 1.09001 * 109.47422 * 119.99747 * 14 12 11 25 25 H 1.09000 * 109.47048 * 179.97438 * 15 14 12 26 26 H 1.08998 * 109.47370 * 179.97438 * 16 15 14 27 27 H 1.09006 * 109.47121 * 60.00170 * 16 15 14 28 28 H 1.08997 * 109.47293 * 239.99913 * 17 16 15 29 29 H 1.09003 * 109.47189 * 119.99762 * 17 16 15 30 30 H 1.09000 * 109.46935 * 180.02562 * 18 17 16 31 31 H 1.09009 * 109.46941 * 180.02562 * 19 18 17 32 32 H 1.08997 * 109.47066 * 300.00001 * 19 18 17 33 33 H 1.08998 * 109.47129 * 240.00258 * 20 19 18 34 34 H 1.09001 * 109.47422 * 119.99707 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 1 0.3057 -4.8077 -0.6041 14 6 0.8531 -5.3013 1.4201 15 6 1.4879 -6.6506 1.7626 16 6 3.0088 -6.5467 1.6319 17 6 3.3722 -6.1618 0.1964 18 6 2.0936 -6.0085 -0.6297 19 6 1.3281 -7.3333 -0.6351 20 6 0.9647 -7.7182 0.8003 21 1 -0.4850 0.8401 -0.0004 22 1 2.9191 -3.6476 -0.0099 23 1 1.2259 -4.5403 2.1058 24 1 -0.2304 -5.3754 1.5132 25 1 1.2294 -6.9246 2.7854 26 1 3.4610 -7.5078 1.8763 27 1 3.3812 -5.7854 2.3175 28 1 3.9970 -6.9402 -0.2414 29 1 3.9172 -5.2178 0.2003 30 1 2.3526 -5.7347 -1.6525 31 1 0.4173 -7.2242 -1.2241 32 1 1.9525 -8.1119 -1.0731 33 1 1.4165 -8.6796 1.0442 34 1 -0.1188 -7.7918 0.8936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307689728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -65.580201 kcal Electronic energy + Delta-G solvation = -15877.492738 eV Core-core repulsion = 13387.702717 eV Total energy + Delta-G solvation = -2489.790021 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20693 -36.78265 -33.03520 -32.15712 -30.97900 -30.62882 -28.71061 -25.90511 -22.39373 -22.10302 -21.47344 -19.48791 -17.39954 -16.19003 -16.08176 -15.50587 -15.43032 -14.80531 -13.87075 -13.38922 -12.75906 -12.40432 -12.13333 -11.88345 -11.78422 -11.69374 -11.68531 -11.42067 -11.34767 -11.10922 -10.90296 -10.44018 -10.34697 -10.21639 -9.66231 -9.60828 -9.38558 -8.80108 -7.53372 -7.38673 -6.13238 -4.58847 3.18108 3.22806 3.24750 4.14253 4.63790 4.77964 4.82178 4.94092 5.11278 5.49002 5.51198 5.59317 5.62187 5.62807 5.67792 5.78414 5.87640 5.93024 6.08171 6.13290 6.22297 6.25762 6.41126 6.51558 6.55111 6.60130 6.78628 6.85498 6.98381 7.47546 8.01570 8.22349 8.40681 9.07384 9.63505 10.66265 10.86337 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052282 B = 0.007094 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.426225 B = 3945.791874 C = 4105.796064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.164 3.836 13 H 0.072 0.928 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.112 4.112 21 H 0.268 0.732 22 H 0.377 0.623 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 -12.111 1.203 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.057 3.943 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.105 4.105 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.112 4.112 19 C -0.147 4.147 20 C -0.149 4.149 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.651 -11.988 1.195 12.914 hybrid contribution 0.935 0.827 0.031 1.249 sum 5.586 -11.160 1.225 12.540 Atomic orbital electron populations 1.70016 1.07011 1.27216 1.35567 1.25693 0.94587 1.00184 0.92667 0.86470 0.79838 0.81231 0.79385 1.19346 1.20597 1.19344 1.20872 0.93483 0.89600 1.54537 0.91654 1.18177 0.87210 0.82516 0.76153 1.90587 1.14097 1.86884 1.54830 1.46298 1.08363 1.04729 1.82255 1.20402 0.95176 0.84033 0.94676 0.90959 1.22070 0.99966 0.95542 0.98417 1.21062 0.95226 0.95894 0.98309 1.21493 0.95657 1.00594 0.96985 1.21490 0.96953 1.01055 0.95401 1.21276 0.95571 0.95133 0.99260 1.21480 0.99954 0.96539 0.96758 1.21525 1.00496 0.97784 0.95127 0.92155 0.79028 0.91392 0.92398 0.91916 0.92740 0.92080 0.92533 0.91810 0.91159 0.92011 0.92316 0.92601 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.56 15.98 7.71 -12.99 -0.10 15.88 16 10 O -0.58 -19.00 14.68 5.20 0.08 -18.92 16 11 N -0.76 -17.24 4.82 -55.24 -0.27 -17.51 16 12 C 0.16 3.20 2.40 -67.95 -0.16 3.04 16 13 H 0.07 1.63 7.58 -51.93 -0.39 1.24 16 14 C -0.12 -2.21 5.48 -26.73 -0.15 -2.35 16 15 C -0.09 -1.22 3.19 -90.64 -0.29 -1.50 16 16 C -0.11 -1.44 5.71 -26.73 -0.15 -1.59 16 17 C -0.11 -1.50 5.54 -26.73 -0.15 -1.65 16 18 C -0.09 -1.42 2.88 -90.65 -0.26 -1.68 16 19 C -0.11 -1.42 5.71 -26.73 -0.15 -1.57 16 20 C -0.11 -1.40 5.71 -26.76 -0.15 -1.55 16 21 H 0.27 7.41 8.29 -40.82 -0.34 7.08 16 22 H 0.38 7.65 6.85 -40.82 -0.28 7.37 16 23 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 267.91 15.07 4.04 4.04 Total: -1.00 -33.18 267.91 -7.71 -40.90 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.19 Total: 5.47 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.00 Total: -6.62 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.39 Total: -40.27 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.08 Total: -18.92 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.18 -7.71 -40.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307689728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.682 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds