Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99932 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 H 1.08995 * 109.46877 * 35.00407 * 12 11 9 14 14 C 1.52997 * 109.47408 * 275.00414 * 12 11 9 15 15 C 1.53004 * 109.47138 * 240.00102 * 14 12 11 16 16 C 1.52998 * 109.47205 * 59.99648 * 15 14 12 17 17 C 1.52997 * 109.47359 * 300.00216 * 16 15 14 18 18 C 1.52998 * 109.46975 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46892 * 299.99915 * 18 17 16 20 20 C 1.52997 * 109.47241 * 60.00248 * 19 18 17 21 21 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 23 23 H 1.09006 * 109.46966 * 359.97438 * 14 12 11 24 24 H 1.09001 * 109.47422 * 119.99747 * 14 12 11 25 25 H 1.09000 * 109.47048 * 179.97438 * 15 14 12 26 26 H 1.08998 * 109.47370 * 179.97438 * 16 15 14 27 27 H 1.09006 * 109.47121 * 60.00170 * 16 15 14 28 28 H 1.08997 * 109.47293 * 239.99913 * 17 16 15 29 29 H 1.09003 * 109.47189 * 119.99762 * 17 16 15 30 30 H 1.09000 * 109.46935 * 180.02562 * 18 17 16 31 31 H 1.09009 * 109.46941 * 180.02562 * 19 18 17 32 32 H 1.08997 * 109.47066 * 300.00001 * 19 18 17 33 33 H 1.08998 * 109.47129 * 240.00258 * 20 19 18 34 34 H 1.09001 * 109.47422 * 119.99707 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 1 0.3057 -4.8077 -0.6041 14 6 0.8531 -5.3013 1.4201 15 6 1.4879 -6.6506 1.7626 16 6 3.0088 -6.5467 1.6319 17 6 3.3722 -6.1618 0.1964 18 6 2.0936 -6.0085 -0.6297 19 6 1.3281 -7.3333 -0.6351 20 6 0.9647 -7.7182 0.8003 21 1 -0.4850 0.8401 -0.0004 22 1 2.9191 -3.6476 -0.0099 23 1 1.2259 -4.5403 2.1058 24 1 -0.2304 -5.3754 1.5132 25 1 1.2294 -6.9246 2.7854 26 1 3.4610 -7.5078 1.8763 27 1 3.3812 -5.7854 2.3175 28 1 3.9970 -6.9402 -0.2414 29 1 3.9172 -5.2178 0.2003 30 1 2.3526 -5.7347 -1.6525 31 1 0.4173 -7.2242 -1.2241 32 1 1.9525 -8.1119 -1.0731 33 1 1.4165 -8.6796 1.0442 34 1 -0.1188 -7.7918 0.8936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307689728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = -88.177609 kcal Electronic energy + Delta-G solvation = -15878.472635 eV Core-core repulsion = 13387.702717 eV Total energy + Delta-G solvation = -2490.769918 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53516 -38.87309 -34.98463 -34.27490 -32.23375 -31.68259 -30.42462 -27.99044 -23.67211 -23.44261 -22.75876 -21.45660 -19.37848 -17.61103 -17.43454 -17.32557 -16.88713 -16.35061 -15.62326 -14.91745 -14.65796 -14.26387 -13.56763 -13.11358 -13.08406 -12.93625 -12.90700 -12.87861 -12.86115 -12.72718 -12.67038 -12.53230 -12.06356 -11.57548 -10.96029 -10.84589 -10.81107 -10.63954 -9.82907 -9.38589 -8.28597 -6.85815 1.38346 1.42407 1.53907 2.24221 2.48133 3.14247 3.59798 3.65971 3.78819 3.85234 4.27870 4.35320 4.42758 4.46642 4.55401 4.56167 4.59632 4.63769 4.73974 4.89255 5.15423 5.16314 5.18292 5.30570 5.34779 5.43548 5.46193 5.50908 5.51887 5.60145 5.89660 6.25914 6.37471 6.86422 7.59360 8.51742 8.69020 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052282 B = 0.007094 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.426225 B = 3945.791874 C = 4105.796064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.159 3.841 13 H 0.029 0.971 14 C -0.117 4.117 15 C -0.081 4.081 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.107 4.107 20 C -0.109 4.109 21 H 0.274 0.726 22 H 0.391 0.609 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -13.319 1.341 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.614 4.614 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.402 5.402 12 C 0.053 3.947 13 H 0.048 0.952 14 C -0.156 4.156 15 C -0.099 4.099 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.146 4.146 21 H 0.084 0.916 22 H 0.226 0.774 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.291 -13.251 1.333 15.183 hybrid contribution 0.082 1.163 -0.015 1.166 sum 7.373 -12.088 1.318 14.220 Atomic orbital electron populations 1.70197 1.09568 1.28918 1.36642 1.26994 0.95527 1.04993 0.91186 0.85072 0.78206 0.74696 0.80299 1.17773 1.19856 1.17818 1.21432 0.94655 0.90325 1.55012 0.89644 1.18585 0.86840 0.84459 0.75873 1.90538 1.16278 1.88011 1.57257 1.45989 1.08993 1.04576 1.80674 1.20582 0.94445 0.84243 0.95442 0.95223 1.21973 0.99110 0.97825 0.96735 1.21050 0.95982 0.93325 0.99580 1.21511 0.94514 1.02057 0.96444 1.21513 0.95903 1.01748 0.95512 1.21239 0.95983 0.94508 0.98895 1.21508 0.99849 0.95775 0.97391 1.21537 1.00590 0.98444 0.94073 0.91635 0.77442 0.94373 0.94334 0.90592 0.89430 0.93107 0.89306 0.92855 0.91555 0.92966 0.89109 0.89311 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.94 11.83 21.84 0.26 -51.68 16 2 C 0.03 1.59 5.50 85.30 0.47 2.06 16 3 Si 1.00 41.93 29.56 68.60 2.03 43.96 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.58 -33.83 9.54 24.83 0.24 -33.60 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.54 32.46 7.71 86.36 0.67 33.13 16 10 O -0.63 -44.07 14.68 -4.29 -0.06 -44.13 16 11 N -0.75 -35.20 4.82 -446.91 -2.15 -37.35 16 12 C 0.16 6.47 2.40 44.97 0.11 6.58 16 13 H 0.03 1.44 7.58 -2.39 -0.02 1.43 16 14 C -0.12 -4.46 5.48 30.59 0.17 -4.29 16 15 C -0.08 -2.13 3.19 -10.81 -0.03 -2.17 16 16 C -0.11 -2.49 5.71 30.59 0.17 -2.32 16 17 C -0.11 -2.62 5.54 30.59 0.17 -2.45 16 18 C -0.09 -2.55 2.88 -10.81 -0.03 -2.58 16 19 C -0.11 -2.52 5.71 30.59 0.17 -2.34 16 20 C -0.11 -2.41 5.71 30.58 0.17 -2.24 16 21 H 0.27 15.65 8.29 -92.70 -0.77 14.88 16 22 H 0.39 16.08 6.85 -92.71 -0.63 15.44 16 23 H 0.04 1.64 7.85 -2.38 -0.02 1.62 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.38 6.51 -2.39 -0.02 1.37 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -76.68 267.91 2.79 -73.89 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.45 Total: 25.52 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 2.28 Total: -10.21 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -1.90 Total: -89.03 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.06 Total: -44.13 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -76.68 2.79 -73.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307689728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.292 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds