Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46793 * 208.38876 * 3 2 1 5 5 C 1.53005 * 109.47012 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.01797 * 305.69973 * 5 4 3 7 7 C 1.54266 * 110.07394 * 67.11902 * 5 4 3 8 8 C 1.54894 * 104.19690 * 95.69606 * 7 5 4 9 9 C 1.54884 * 102.74702 * 37.94277 * 8 7 5 10 10 H 1.08994 * 110.48963 * 80.73665 * 9 8 7 11 11 C 1.53006 * 110.59935 * 203.32575 * 9 8 7 12 12 C 1.50699 * 109.46620 * 289.84074 * 11 9 8 13 13 H 1.08001 * 120.00300 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99632 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00117 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00027 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47020 * 89.99801 * 16 14 12 18 18 H 1.48498 * 109.47220 * 209.99904 * 16 14 12 19 19 H 1.48494 * 109.46999 * 329.99971 * 16 14 12 20 20 C 1.53873 * 110.03228 * 184.30983 * 5 4 3 21 21 H 1.09002 * 110.03049 * 359.94664 * 20 5 4 22 22 O 1.42900 * 110.03341 * 121.33377 * 20 5 4 23 23 H 1.08997 * 109.47184 * 88.39381 * 3 2 1 24 24 H 1.09005 * 109.47545 * 328.38469 * 3 2 1 25 25 H 1.09002 * 109.47255 * 60.00493 * 4 3 2 26 26 H 1.08994 * 109.47219 * 300.00065 * 4 3 2 27 27 H 1.08998 * 110.48638 * 214.37743 * 7 5 4 28 28 H 1.09001 * 110.48707 * 337.01830 * 7 5 4 29 29 H 1.09004 * 110.75571 * 279.62799 * 8 7 5 30 30 H 1.08990 * 110.75231 * 156.26079 * 8 7 5 31 31 H 1.08993 * 109.46876 * 49.84046 * 11 9 8 32 32 H 1.08995 * 109.47184 * 169.84385 * 11 9 8 33 33 H 0.97000 * 120.00042 * 179.97438 * 15 14 12 34 34 H 0.96701 * 114.00129 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2700 0.6859 5 6 4.6473 1.2710 0.6853 6 1 5.0213 0.3500 1.1326 7 6 5.1762 1.4107 -0.7571 8 6 5.4455 2.9275 -0.9178 9 6 6.0043 3.3244 0.4711 10 1 7.0608 3.0670 0.5451 11 6 5.7996 4.8190 0.7267 12 6 6.7118 5.6120 -0.1733 13 1 7.3713 5.1012 -0.8592 14 6 6.7037 6.9898 -0.1217 15 7 5.8996 7.6119 0.7125 16 14 7.8340 7.9729 -1.2378 17 1 7.1364 8.2643 -2.5160 18 1 8.2002 9.2486 -0.5717 19 1 9.0637 7.1873 -1.5129 20 6 5.1739 2.4878 1.4663 21 1 4.3394 3.0781 1.8449 22 8 5.9982 2.0545 2.5502 23 1 2.9713 -0.0280 -1.0272 24 1 2.9717 -0.8743 0.5387 25 1 2.7540 1.2987 1.7132 26 1 2.7536 2.1449 0.1473 27 1 6.0990 0.8441 -0.8816 28 1 4.4242 1.0788 -1.4730 29 1 4.5204 3.4638 -1.1296 30 1 6.1851 3.1080 -1.6977 31 1 4.7632 5.0845 0.5186 32 1 6.0304 5.0446 1.7678 33 1 5.8942 8.5812 0.7491 34 1 6.3607 2.7764 3.0817 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308627912.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -81.872152 kcal Electronic energy + Delta-G solvation = -15087.395007 eV Core-core repulsion = 12596.898514 eV Total energy + Delta-G solvation = -2490.496493 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27511 -37.81046 -36.12779 -35.51765 -33.90015 -31.22137 -28.74979 -27.48398 -24.53164 -23.94057 -20.81650 -20.35891 -18.70284 -18.37257 -17.81145 -16.58427 -16.43247 -15.64519 -15.04156 -15.01643 -14.78538 -14.33443 -14.04698 -13.75265 -13.62486 -13.17799 -13.02639 -12.98910 -12.64206 -12.45437 -12.35218 -12.07540 -11.79661 -11.49756 -11.33840 -11.11517 -11.04490 -10.94683 -10.52640 -10.41841 -8.17591 -6.27012 1.40896 1.41140 1.52072 1.82923 1.89099 2.42145 3.10217 3.16146 3.49838 3.78610 3.92483 4.17594 4.31386 4.45764 4.51471 4.65294 4.72704 4.78378 4.89543 4.92482 5.01443 5.16999 5.21167 5.32656 5.38942 5.43689 5.53524 5.56654 5.66263 5.79350 5.89822 6.29835 6.68034 6.89294 6.91240 7.42128 8.93797 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.005873 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.726722 B = 4766.757257 C = 4973.034233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.237 3.763 3 C -0.019 4.019 4 C -0.106 4.106 5 C -0.073 4.073 6 H 0.101 0.899 7 C -0.112 4.112 8 C -0.109 4.109 9 C -0.112 4.112 10 H 0.059 0.941 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.958 3.042 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.263 1.263 20 C 0.103 3.897 21 H 0.042 0.958 22 O -0.578 6.578 23 H 0.138 0.862 24 H 0.143 0.857 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.055 0.945 31 H -0.010 1.010 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -14.824 -1.881 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.079 4.079 3 C -0.059 4.059 4 C -0.145 4.145 5 C -0.091 4.091 6 H 0.120 0.880 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.130 4.130 10 H 0.078 0.922 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.187 1.187 20 C 0.044 3.956 21 H 0.060 0.940 22 O -0.385 6.385 23 H 0.156 0.844 24 H 0.160 0.840 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.008 0.992 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.547 -15.258 -2.066 15.606 hybrid contribution 0.954 2.012 0.047 2.227 sum -1.593 -13.247 -2.019 13.494 Atomic orbital electron populations 1.81247 1.15375 1.10978 1.11424 1.29951 0.95948 0.91054 0.90964 1.19647 0.78582 1.01121 1.06504 1.21541 0.94382 0.97222 1.01399 1.21601 0.94106 0.97836 0.95562 0.88032 1.22527 1.02139 0.94716 0.95556 1.22324 0.99886 0.96654 0.95773 1.22636 0.98892 0.95008 0.96513 0.92220 1.19030 0.94903 0.91720 0.94602 1.21634 1.22041 0.91699 1.21269 0.92320 1.25913 0.97298 0.99405 0.97146 1.70089 1.39904 1.08898 1.38732 0.85555 0.79415 0.77949 0.78810 1.19958 1.21099 1.18737 1.22691 0.91376 0.95019 0.86481 0.94018 1.86337 1.68943 1.38383 1.44846 0.84394 0.83959 0.91293 0.92005 0.90477 0.88311 0.92929 0.92656 0.99153 0.99595 0.92989 0.76700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.13 18.54 20.00 0.37 -13.75 16 2 C 0.24 4.67 15.43 89.44 1.38 6.05 16 3 C -0.02 -0.21 5.53 28.79 0.16 -0.05 16 4 C -0.11 -1.90 4.36 30.60 0.13 -1.76 16 5 C -0.07 -1.54 2.75 -10.07 -0.03 -1.57 16 6 H 0.10 1.87 7.95 -2.39 -0.02 1.85 16 7 C -0.11 -2.32 6.21 31.67 0.20 -2.12 16 8 C -0.11 -3.47 6.00 31.89 0.19 -3.28 16 9 C -0.11 -4.22 2.52 -9.72 -0.02 -4.24 16 10 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 11 C 0.03 1.73 4.33 29.85 0.13 1.85 16 12 C -0.53 -28.99 8.77 25.60 0.22 -28.77 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 15 N -0.94 -56.22 13.29 21.45 0.28 -55.94 16 16 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.10 3.18 3.48 31.32 0.11 3.29 16 21 H 0.04 1.40 7.37 -2.39 -0.02 1.38 16 22 O -0.58 -17.55 13.22 -148.98 -1.97 -19.52 16 23 H 0.14 0.88 6.50 -2.39 -0.02 0.87 16 24 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.40 6.23 -2.39 -0.01 1.39 16 29 H 0.05 1.80 7.97 -2.39 -0.02 1.78 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H -0.01 -0.54 8.02 -2.39 -0.02 -0.56 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.38 10.52 9.11 -74.06 -0.67 9.84 16 Total: -1.00 -70.19 286.88 4.06 -66.14 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.41 Total: 7.57 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 2.93 Total: -30.15 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: 0.66 Total: -69.69 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.97 Total: -19.52 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.19 4.06 -66.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308627912.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.736 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds