Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.79038 * 2 1 4 4 C 1.41380 * 106.83936 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.84338 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79070 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46779 * 90.00918 * 6 5 4 8 8 N 1.46894 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47038 * 34.99283 * 9 8 7 11 11 C 1.53005 * 109.46661 * 274.99752 * 9 8 7 12 12 C 1.50701 * 109.47195 * 155.00140 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.34301 * 125.78663 * 180.34439 * 2 1 3 21 21 H 1.09010 * 109.46617 * 90.00129 * 1 2 3 22 22 H 1.09000 * 109.47607 * 210.00201 * 1 2 3 23 23 H 1.08998 * 109.47154 * 330.00893 * 1 2 3 24 24 H 1.08002 * 126.57814 * 0.05060 * 3 2 1 25 25 H 1.08000 * 126.57713 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.47219 * 330.01139 * 6 5 4 27 27 H 1.08995 * 109.47179 * 210.00197 * 6 5 4 28 28 H 1.08997 * 109.47379 * 59.99708 * 7 6 5 29 29 H 1.09003 * 109.46894 * 299.99827 * 7 6 5 30 30 H 1.00902 * 110.99830 * 303.94975 * 8 7 6 31 31 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 32 32 H 1.08995 * 109.47438 * 299.99503 * 11 9 8 33 33 H 1.08996 * 109.47069 * 60.00362 * 11 9 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0014 7 6 5.1742 -1.9511 1.4409 8 7 6.3337 -2.8529 1.4400 9 6 6.7506 -3.1757 2.8111 10 1 5.8718 -3.2382 3.4529 11 6 7.6851 -2.0814 3.3309 12 6 7.4731 -4.4983 2.8183 13 1 7.6086 -5.0446 1.8965 14 6 7.9556 -5.0137 4.0025 15 7 7.7903 -4.3487 5.1250 16 14 8.8442 -6.6568 4.0126 17 1 8.8979 -7.1990 2.6312 18 1 10.2253 -6.4695 4.5254 19 1 8.1155 -7.6084 4.8894 20 8 2.2924 -1.0894 -0.0065 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.9666 2.1204 0.0008 25 1 4.5212 1.2433 -0.0004 26 1 5.6035 -1.1588 -0.5159 27 1 4.5101 -2.5634 -0.5148 28 1 4.3412 -2.4301 1.9554 29 1 5.4346 -1.0256 1.9544 30 1 6.1390 -3.6917 0.9140 31 1 7.9941 -2.3207 4.3485 32 1 8.5639 -2.0189 2.6892 33 1 7.1626 -1.1248 3.3258 34 1 8.1294 -4.7115 5.9582 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308653338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = -0.986998 kcal Electronic energy + Delta-G solvation = -14709.440376 eV Core-core repulsion = 12222.451327 eV Total energy + Delta-G solvation = -2486.989049 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.46745 -36.30291 -33.63836 -33.07877 -32.04195 -30.24770 -27.76222 -25.38254 -24.76385 -22.07952 -21.49093 -19.99994 -19.74503 -16.63072 -16.34014 -15.96149 -14.99754 -14.60801 -14.32212 -13.58199 -13.47119 -13.21113 -13.03372 -12.70710 -12.36801 -12.17719 -11.94227 -11.78260 -11.19753 -10.95828 -10.75074 -10.67765 -10.21725 -10.11309 -9.96844 -9.74875 -8.81999 -8.48060 -8.12887 -7.30297 -6.02396 -4.09034 1.81114 2.71036 3.00192 3.29119 3.36870 3.41138 4.40268 4.68196 4.93603 5.12443 5.20022 5.28928 5.30504 5.44032 5.48701 5.55766 5.71805 5.91121 5.94614 6.03070 6.28581 6.39675 6.47302 6.65676 6.89388 7.14984 7.23591 7.31002 7.50025 7.78263 7.89810 8.27231 8.37014 8.65927 9.01529 9.57024 11.04101 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054614 B = 0.004675 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.567834 B = 5987.262560 C = 6095.014555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.029 4.029 3 C -0.211 4.211 4 C -0.214 4.214 5 C 0.005 3.995 6 C -0.039 4.039 7 C 0.065 3.935 8 N -0.689 5.689 9 C 0.210 3.790 10 H 0.001 0.999 11 C -0.124 4.124 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.285 1.285 20 O -0.175 6.175 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.331 0.669 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.004 0.996 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 8.362 -9.238 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.230 4.230 4 C -0.233 4.233 5 C -0.046 4.046 6 C -0.077 4.077 7 C -0.065 4.065 8 N -0.320 5.320 9 C 0.103 3.897 10 H 0.019 0.981 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 O -0.072 6.072 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.162 0.838 25 H 0.165 0.835 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.671 8.557 -9.097 16.427 hybrid contribution -0.141 -1.160 0.437 1.247 sum -10.811 7.397 -8.660 15.703 Atomic orbital electron populations 1.20249 0.85464 1.03850 1.03141 1.22369 0.93924 0.84408 1.07167 1.21527 0.92898 0.99105 1.09445 1.21561 0.98061 0.93987 1.09729 1.22602 0.82850 0.94825 1.04309 1.20234 0.90465 0.97412 0.99572 1.21876 0.92846 0.98546 0.93224 1.60735 1.33199 1.19411 1.18637 1.19125 0.93845 0.94041 0.82699 0.98116 1.21711 0.98651 0.95038 1.02847 1.21301 1.36733 1.03731 0.93902 0.92093 1.24929 0.96041 0.97612 0.95482 1.69911 1.46443 1.38075 0.98459 0.86456 0.79381 0.83588 0.78062 1.19725 1.20953 1.21109 1.83970 1.16644 1.35055 1.71562 0.90444 0.90687 0.89612 0.83826 0.83506 0.88174 0.90498 0.96032 0.91379 0.85225 0.90122 0.94902 0.97701 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.23 16 2 C -0.03 -0.37 7.32 -35.62 -0.26 -0.64 16 3 C -0.21 -2.70 10.81 -39.70 -0.43 -3.13 16 4 C -0.21 -3.03 10.81 -39.70 -0.43 -3.46 16 5 C 0.00 0.07 6.57 -35.63 -0.23 -0.16 16 6 C -0.04 -0.59 6.01 -27.88 -0.17 -0.76 16 7 C 0.07 1.22 5.47 -3.82 -0.02 1.19 16 8 N -0.69 -14.84 6.30 -107.95 -0.68 -15.52 16 9 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 10 H 0.00 0.03 7.80 -51.93 -0.41 -0.37 16 11 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 12 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 13 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.89 -25.72 11.33 55.43 0.63 -25.09 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 O -0.18 -2.74 10.65 5.70 0.06 -2.68 16 21 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 25 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.07 1.31 7.43 -51.93 -0.39 0.92 16 30 H 0.33 6.86 8.22 -39.29 -0.32 6.54 16 31 H 0.08 2.22 6.08 -51.93 -0.32 1.90 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -30.07 288.17 -7.22 -37.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.15 Total: 3.10 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -1.39 Total: -17.78 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.05 Total: -40.61 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.06 Total: -2.68 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.07 -7.22 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308653338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.302 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds