Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.79038 * 2 1 4 4 C 1.41380 * 106.83936 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.84338 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79070 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46779 * 90.00918 * 6 5 4 8 8 N 1.46894 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47038 * 34.99283 * 9 8 7 11 11 C 1.53005 * 109.46661 * 274.99752 * 9 8 7 12 12 C 1.50701 * 109.47195 * 155.00140 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.34301 * 125.78663 * 180.34439 * 2 1 3 21 21 H 1.09010 * 109.46617 * 90.00129 * 1 2 3 22 22 H 1.09000 * 109.47607 * 210.00201 * 1 2 3 23 23 H 1.08998 * 109.47154 * 330.00893 * 1 2 3 24 24 H 1.08002 * 126.57814 * 0.05060 * 3 2 1 25 25 H 1.08000 * 126.57713 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.47219 * 330.01139 * 6 5 4 27 27 H 1.08995 * 109.47179 * 210.00197 * 6 5 4 28 28 H 1.08997 * 109.47379 * 59.99708 * 7 6 5 29 29 H 1.09003 * 109.46894 * 299.99827 * 7 6 5 30 30 H 1.00902 * 110.99830 * 303.94975 * 8 7 6 31 31 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 32 32 H 1.08995 * 109.47438 * 299.99503 * 11 9 8 33 33 H 1.08996 * 109.47069 * 60.00362 * 11 9 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0014 7 6 5.1742 -1.9511 1.4409 8 7 6.3337 -2.8529 1.4400 9 6 6.7506 -3.1757 2.8111 10 1 5.8718 -3.2382 3.4529 11 6 7.6851 -2.0814 3.3309 12 6 7.4731 -4.4983 2.8183 13 1 7.6086 -5.0446 1.8965 14 6 7.9556 -5.0137 4.0025 15 7 7.7903 -4.3487 5.1250 16 14 8.8442 -6.6568 4.0126 17 1 8.8979 -7.1990 2.6312 18 1 10.2253 -6.4695 4.5254 19 1 8.1155 -7.6084 4.8894 20 8 2.2924 -1.0894 -0.0065 21 1 -0.3633 0.0000 -1.0278 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.9666 2.1204 0.0008 25 1 4.5212 1.2433 -0.0004 26 1 5.6035 -1.1588 -0.5159 27 1 4.5101 -2.5634 -0.5148 28 1 4.3412 -2.4301 1.9554 29 1 5.4346 -1.0256 1.9544 30 1 6.1390 -3.6917 0.9140 31 1 7.9941 -2.3207 4.3485 32 1 8.5639 -2.0189 2.6892 33 1 7.1626 -1.1248 3.3258 34 1 8.1294 -4.7115 5.9582 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308653338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = -19.675147 kcal Electronic energy + Delta-G solvation = -14710.250755 eV Core-core repulsion = 12222.451327 eV Total energy + Delta-G solvation = -2487.799428 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.52616 -38.07312 -35.32531 -34.09755 -33.59072 -31.61667 -29.36275 -27.37315 -26.10081 -23.46048 -22.60977 -21.76699 -21.03346 -18.57545 -17.52300 -17.16727 -16.79435 -16.26202 -15.63512 -15.16490 -15.05067 -14.25746 -13.96074 -13.82524 -13.72649 -13.63694 -13.40980 -13.01398 -12.87044 -12.67088 -12.56000 -12.34958 -12.22175 -11.93552 -11.86509 -10.91335 -10.79982 -10.59417 -9.19341 -9.13467 -8.14421 -6.29304 0.75016 1.42085 1.43535 1.55804 1.67600 2.00224 2.41535 3.14289 3.48953 3.89538 4.05126 4.14626 4.16053 4.28643 4.54879 4.55710 4.71615 4.76491 4.84786 4.90561 4.94517 5.02070 5.06188 5.16515 5.19172 5.33254 5.45103 5.65429 5.67136 5.83647 6.19834 6.25488 6.41558 6.72583 6.97102 7.41435 8.91820 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054614 B = 0.004675 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.567834 B = 5987.262560 C = 6095.014555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.034 4.034 3 C -0.222 4.222 4 C -0.215 4.215 5 C -0.027 4.027 6 C -0.025 4.025 7 C 0.072 3.928 8 N -0.682 5.682 9 C 0.212 3.788 10 H -0.034 1.034 11 C -0.113 4.113 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.281 1.281 20 O -0.198 6.198 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.005 0.995 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.020 0.980 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 8.658 -10.304 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.241 4.241 4 C -0.234 4.234 5 C -0.076 4.076 6 C -0.062 4.062 7 C -0.058 4.058 8 N -0.313 5.313 9 C 0.104 3.896 10 H -0.017 1.017 11 C -0.171 4.171 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.791 3.209 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.207 1.207 20 O -0.096 6.096 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.127 0.873 24 H 0.188 0.812 25 H 0.177 0.823 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.185 8.862 -10.184 17.532 hybrid contribution -0.073 -1.175 0.765 1.404 sum -11.258 7.688 -9.419 16.570 Atomic orbital electron populations 1.20474 0.82478 1.05045 1.04691 1.23286 0.95705 0.83846 1.05510 1.21906 0.92249 1.00483 1.09477 1.21896 0.99364 0.93775 1.08353 1.22590 0.82942 0.95304 1.06810 1.20022 0.91209 0.98116 0.96856 1.21838 0.91073 0.97162 0.95754 1.60643 1.34726 1.19823 1.16096 1.18960 0.92495 0.93930 0.84242 1.01664 1.21537 0.98625 0.95687 1.01279 1.21625 1.37138 1.04669 0.94215 0.91886 1.25779 0.96721 1.01213 0.95065 1.70041 1.47138 1.39696 0.99029 0.85384 0.78052 0.79081 0.78364 1.18841 1.20494 1.20697 1.83952 1.17018 1.36509 1.72103 0.88598 0.90547 0.87334 0.81165 0.82266 0.86877 0.89835 0.97696 0.92090 0.84683 0.92485 0.94913 0.96077 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.29 16 2 C -0.03 -0.83 7.32 24.83 0.18 -0.65 16 3 C -0.22 -5.27 10.81 22.19 0.24 -5.03 16 4 C -0.21 -5.80 10.81 22.19 0.24 -5.56 16 5 C -0.03 -0.80 6.57 24.83 0.16 -0.63 16 6 C -0.02 -0.73 6.01 29.85 0.18 -0.55 16 7 C 0.07 2.68 5.47 86.31 0.47 3.16 16 8 N -0.68 -29.43 6.30 -495.43 -3.12 -32.56 16 9 C 0.21 11.16 2.60 44.17 0.11 11.27 16 10 H -0.03 -2.01 7.80 -2.39 -0.02 -2.02 16 11 C -0.11 -5.79 9.19 71.98 0.66 -5.12 16 12 C -0.54 -29.98 8.59 25.60 0.22 -29.76 16 13 H 0.06 3.40 7.62 -2.91 -0.02 3.38 16 14 C 0.01 0.63 5.31 84.65 0.45 1.08 16 15 N -0.92 -53.79 11.33 21.45 0.24 -53.54 16 16 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 O -0.20 -6.07 10.65 -2.53 -0.03 -6.10 16 21 H 0.10 1.07 8.14 -2.38 -0.02 1.06 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 25 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 26 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.00 0.20 8.06 -2.39 -0.02 0.18 16 29 H 0.06 2.36 7.43 -2.39 -0.02 2.34 16 30 H 0.34 13.89 8.22 -89.69 -0.74 13.15 16 31 H 0.06 3.19 6.08 -2.38 -0.01 3.17 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -64.24 288.17 3.12 -61.11 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.34 Total: 17.47 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 3.66 Total: -32.08 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.88 Total: -86.10 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.03 Total: -6.10 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.24 3.12 -61.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308653338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.438 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds