Wall clock time and date at job start Mon Mar 30 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34511 * 125.78784 * 2 1 4 4 C 1.41381 * 106.84253 * 180.02562 * 3 2 1 5 5 C 1.34521 * 106.83937 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.79190 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47393 * 89.99362 * 6 5 4 8 8 N 1.46905 * 109.47039 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46917 * 324.99892 * 9 8 7 11 11 C 1.52993 * 109.47269 * 84.99904 * 9 8 7 12 12 C 1.50692 * 109.46945 * 205.00102 * 9 8 7 13 13 H 1.08004 * 120.00412 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00142 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99996 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00298 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.46970 * 59.99698 * 16 14 12 18 18 H 1.48495 * 109.47163 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47139 * 300.00207 * 16 14 12 20 20 O 1.34302 * 108.41798 * 0.25720 * 5 4 3 21 21 H 1.09004 * 109.47373 * 89.99595 * 1 2 3 22 22 H 1.09000 * 109.47196 * 209.99441 * 1 2 3 23 23 H 1.09002 * 109.46867 * 329.99567 * 1 2 3 24 24 H 1.07999 * 126.58013 * 0.06131 * 3 2 1 25 25 H 1.07999 * 126.58421 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.46495 * 329.99248 * 6 5 4 27 27 H 1.08998 * 109.46910 * 209.99749 * 6 5 4 28 28 H 1.09001 * 109.47393 * 60.00436 * 7 6 5 29 29 H 1.08998 * 109.47408 * 300.00082 * 7 6 5 30 30 H 1.00901 * 110.99869 * 56.04956 * 8 7 6 31 31 H 1.09000 * 109.47161 * 60.00137 * 11 9 8 32 32 H 1.09006 * 109.47343 * 180.02562 * 11 9 8 33 33 H 1.09004 * 109.47587 * 300.00069 * 11 9 8 34 34 H 0.97004 * 120.00312 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0019 7 6 5.1729 -1.9520 1.4404 8 7 6.3325 -2.8539 1.4400 9 6 6.7474 -3.1785 2.8113 10 1 6.5913 -2.3114 3.4530 11 6 5.9166 -4.3535 3.3308 12 6 8.2070 -3.5531 2.8191 13 1 8.7701 -3.5506 1.8975 14 6 8.8234 -3.8999 4.0026 15 7 8.1377 -3.9034 5.1248 16 14 10.6327 -4.3649 4.0122 17 1 11.4395 -3.2246 3.5081 18 1 11.0518 -4.6942 5.3982 19 1 10.8448 -5.5462 3.1376 20 8 2.2925 -1.0894 -0.0072 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.9665 2.1204 0.0009 25 1 4.5212 1.2434 -0.0004 26 1 5.6040 -1.1583 -0.5153 27 1 4.5107 -2.5630 -0.5163 28 1 4.3395 -2.4315 1.9539 29 1 5.4328 -1.0269 1.9549 30 1 7.0977 -2.4586 0.9144 31 1 6.0726 -5.2207 2.6891 32 1 6.2241 -4.5941 4.3485 33 1 4.8607 -4.0826 3.3252 34 1 8.5713 -4.1478 5.9574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308653339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:45 Heat of formation + Delta-G solvation = -19.442933 kcal Electronic energy + Delta-G solvation = -14710.946456 eV Core-core repulsion = 12223.157098 eV Total energy + Delta-G solvation = -2487.789359 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.52659 -38.07533 -35.32682 -34.09610 -33.58819 -31.61125 -29.36845 -27.37321 -26.10567 -23.43980 -22.63117 -21.76996 -21.03363 -18.55890 -17.50007 -17.14505 -16.88791 -16.22354 -15.63364 -15.26521 -14.70973 -14.52830 -13.94800 -13.87355 -13.73249 -13.61187 -13.36149 -12.96351 -12.85404 -12.70526 -12.56389 -12.34252 -12.23062 -12.02220 -11.80238 -10.92835 -10.80799 -10.57543 -9.18607 -9.12667 -8.13567 -6.28691 0.75043 1.43647 1.46047 1.53601 1.66853 2.00359 2.42121 3.14927 3.50418 3.91732 3.97669 4.12993 4.18404 4.32435 4.54937 4.56994 4.72385 4.74840 4.84023 4.86827 4.97282 5.01595 5.05149 5.14787 5.18801 5.33834 5.44238 5.65301 5.67108 5.82971 6.19467 6.25566 6.42601 6.73497 6.98682 7.41937 8.92268 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.061491 B = 0.004647 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.242726 B = 6023.687680 C = 6190.418679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.217 4.217 5 C -0.025 4.025 6 C -0.025 4.025 7 C 0.072 3.928 8 N -0.684 5.684 9 C 0.214 3.786 10 H -0.032 1.032 11 C -0.114 4.114 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.270 1.270 20 O -0.196 6.196 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.170 0.830 25 H 0.158 0.842 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.016 0.984 30 H 0.338 0.662 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 8.696 -10.290 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.242 4.242 4 C -0.237 4.237 5 C -0.075 4.075 6 C -0.063 4.063 7 C -0.058 4.058 8 N -0.316 5.316 9 C 0.105 3.895 10 H -0.014 1.014 11 C -0.173 4.173 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.195 1.195 20 O -0.094 6.094 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.126 0.874 24 H 0.188 0.812 25 H 0.176 0.824 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.156 0.844 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.977 7.792 -10.162 17.533 hybrid contribution 1.381 0.693 0.740 1.714 sum -10.596 8.485 -9.421 16.524 Atomic orbital electron populations 1.20477 0.82434 1.05075 1.04705 1.23291 0.95725 0.83821 1.05411 1.21895 0.92241 1.00490 1.09566 1.21891 0.99368 0.93800 1.08594 1.22577 0.83053 0.95168 1.06684 1.20011 0.91352 0.98022 0.96871 1.21815 0.94335 0.93910 0.95745 1.60615 1.09088 1.45690 1.16166 1.18931 0.93860 0.92434 0.84262 1.01438 1.21554 0.95684 0.98663 1.01349 1.21570 0.95146 1.46818 0.94288 0.91778 1.25787 1.02793 0.95121 0.95048 1.70030 1.37829 1.48966 0.99073 0.85486 0.79410 0.78919 0.77047 1.19374 1.21015 1.19527 1.83957 1.16959 1.36446 1.72013 0.88593 0.90463 0.87356 0.81215 0.82394 0.87250 0.89445 0.93180 0.96579 0.84422 0.95082 0.92359 0.96407 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.42 71.24 0.74 -0.29 16 2 C -0.03 -0.80 7.32 24.83 0.18 -0.62 16 3 C -0.22 -5.30 10.81 22.19 0.24 -5.06 16 4 C -0.22 -5.87 10.81 22.19 0.24 -5.63 16 5 C -0.02 -0.74 6.58 24.83 0.16 -0.58 16 6 C -0.03 -0.75 6.01 29.85 0.18 -0.57 16 7 C 0.07 2.69 5.47 86.30 0.47 3.16 16 8 N -0.68 -29.52 6.30 -495.47 -3.12 -32.64 16 9 C 0.21 11.23 2.60 44.16 0.11 11.35 16 10 H -0.03 -1.86 7.80 -2.39 -0.02 -1.88 16 11 C -0.11 -5.93 9.19 71.98 0.66 -5.27 16 12 C -0.54 -29.95 8.59 25.60 0.22 -29.73 16 13 H 0.06 3.42 7.62 -2.91 -0.02 3.40 16 14 C 0.01 0.65 5.30 84.66 0.45 1.10 16 15 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 16 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 O -0.20 -6.02 10.65 -2.48 -0.03 -6.04 16 21 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 25 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.05 2.02 7.44 -2.39 -0.02 2.00 16 29 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 30 H 0.34 13.68 8.23 -89.69 -0.74 12.95 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.06 3.29 6.07 -2.38 -0.01 3.27 16 33 H 0.02 0.82 7.45 -2.39 -0.02 0.81 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -64.24 288.15 3.12 -61.12 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.34 Total: 17.72 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.66 Total: -32.14 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.88 Total: -86.16 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.03 Total: -6.04 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.24 3.12 -61.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308653339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.679 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds