Wall clock time and date at job start Mon Mar 30 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41378 * 126.58388 * 2 1 4 4 C 1.34513 * 106.84076 * 180.23632 * 3 2 1 5 5 O 1.34300 * 108.42182 * 359.76846 * 4 3 2 6 6 C 1.34299 * 109.47729 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.79075 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.46920 * 165.01795 * 7 6 5 9 9 C 1.52999 * 109.47011 * 285.02096 * 7 6 5 10 10 N 1.46902 * 109.46835 * 45.01804 * 7 6 5 11 11 C 1.46906 * 110.99573 * 155.00105 * 10 7 6 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 7 13 13 C 1.50696 * 109.47332 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00615 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99691 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47000 * 89.99937 * 17 15 13 19 19 H 1.48502 * 109.47306 * 209.99785 * 17 15 13 20 20 H 1.48501 * 109.47411 * 330.00053 * 17 15 13 21 21 H 1.08992 * 109.47171 * 270.16326 * 1 2 3 22 22 H 1.08999 * 109.46621 * 30.16404 * 1 2 3 23 23 H 1.09002 * 109.47160 * 150.16141 * 1 2 3 24 24 H 1.07998 * 126.57602 * 359.97438 * 3 2 1 25 25 H 1.08006 * 125.78813 * 179.78643 * 4 3 2 26 26 H 1.09003 * 109.46954 * 59.99821 * 9 7 6 27 27 H 1.09000 * 109.47023 * 180.02562 * 9 7 6 28 28 H 1.09004 * 109.46766 * 299.99927 * 9 7 6 29 29 H 1.00896 * 111.00219 * 278.95745 * 10 7 6 30 30 H 1.09002 * 109.46991 * 299.99841 * 11 10 7 31 31 H 1.09000 * 109.47202 * 60.00133 * 11 10 7 32 32 H 1.08995 * 109.47213 * 300.00679 * 12 11 10 33 33 H 1.09008 * 109.47264 * 60.00068 * 12 11 10 34 34 H 0.97001 * 120.00228 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0053 5 8 3.5847 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0026 7 6 1.8521 -2.5165 0.0059 8 1 0.7971 -2.5617 0.2762 9 6 2.0478 -3.1171 -1.3876 10 7 2.6411 -3.2788 0.9829 11 6 1.8995 -4.4558 1.4549 12 6 2.7516 -5.2229 2.4679 13 6 1.9907 -6.4300 2.9527 14 1 0.9986 -6.6302 2.5756 15 6 2.5612 -7.2793 3.8768 16 7 1.8974 -8.3330 4.2994 17 14 4.2774 -6.9335 4.5285 18 1 4.1840 -6.0798 5.7400 19 1 4.9425 -8.2149 4.8760 20 1 5.0699 -6.2307 3.4877 21 1 -0.3633 0.0029 1.0276 22 1 -0.3632 0.8885 -0.5164 23 1 -0.3633 -0.8914 -0.5113 24 1 2.0368 2.1689 -0.0004 25 1 4.5061 1.2921 -0.0100 26 1 3.1028 -3.0717 -1.6578 27 1 1.7172 -4.1557 -1.3853 28 1 1.4624 -2.5514 -2.1125 29 1 3.5346 -3.5451 0.5972 30 1 0.9719 -4.1347 1.9290 31 1 1.6699 -5.1039 0.6091 32 1 3.6789 -5.5439 1.9936 33 1 2.9816 -4.5751 3.3139 34 1 2.2987 -8.9304 4.9499 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308664708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:45 Heat of formation + Delta-G solvation = -0.736636 kcal Electronic energy + Delta-G solvation = -14949.089872 eV Core-core repulsion = 12462.111679 eV Total energy + Delta-G solvation = -2486.978193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.46169 -36.98496 -34.10493 -33.24141 -31.53044 -29.64387 -28.24802 -26.93177 -24.22788 -22.66845 -21.01284 -20.49121 -19.36644 -16.92963 -16.76256 -15.95361 -15.03278 -14.87063 -14.40332 -14.11002 -13.48671 -13.09204 -12.97559 -12.73853 -12.68093 -12.47519 -12.37118 -12.02622 -11.50397 -11.31855 -11.17957 -11.03018 -10.22752 -9.80554 -9.78106 -9.51876 -9.23067 -8.53303 -8.25226 -7.98386 -6.04149 -4.02657 1.87608 2.65664 3.16949 3.34059 3.40771 3.45997 4.47029 4.47125 4.81177 4.94961 4.99222 5.18538 5.25852 5.30701 5.46407 5.61628 5.65579 5.73043 5.88123 5.90540 6.03360 6.12543 6.16124 6.24430 6.33064 6.62341 6.74970 7.08115 7.31202 7.37475 7.55880 7.71376 7.87251 8.52737 8.99543 9.58359 11.09100 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040336 B = 0.005610 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.995879 B = 4989.783118 C = 5251.867159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.192 4.192 3 C -0.211 4.211 4 C -0.051 4.051 5 O -0.165 6.165 6 C 0.023 3.977 7 C 0.160 3.840 8 H 0.105 0.895 9 C -0.181 4.181 10 N -0.687 5.687 11 C 0.073 3.927 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.143 0.857 25 H 0.197 0.803 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.341 0.659 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.014 0.986 33 H 0.021 0.979 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 16.895 -10.928 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.194 4.194 3 C -0.230 4.230 4 C -0.119 4.119 5 O -0.060 6.060 6 C -0.029 4.029 7 C 0.050 3.950 8 H 0.123 0.877 9 C -0.240 4.240 10 N -0.317 5.317 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.161 0.839 25 H 0.214 0.786 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.896 16.917 -10.266 19.809 hybrid contribution 0.899 -0.188 -0.287 0.962 sum 1.795 16.729 -10.553 19.861 Atomic orbital electron populations 1.20148 0.89502 1.02066 1.02065 1.20150 0.96992 0.92000 1.10224 1.21619 0.92719 0.99479 1.09209 1.23903 0.99502 0.81117 1.07371 1.84030 1.29011 1.22233 1.70775 1.22358 0.80685 0.95981 1.03859 1.20073 0.98327 0.85102 0.91533 0.87727 1.22522 1.02593 1.01723 0.97151 1.60648 1.06480 1.26109 1.38505 1.22029 0.97543 0.88352 0.97542 1.19548 0.95555 0.95230 0.94476 1.21054 1.03475 1.07076 1.24378 0.91059 1.24994 0.97675 0.94750 0.95927 1.69913 1.37972 1.14460 1.31934 0.86745 0.85052 0.77527 0.79759 1.20232 1.21484 1.18975 0.91522 0.91917 0.91837 0.83935 0.78577 0.92085 0.91247 0.91997 0.84041 0.91543 0.95558 0.96774 0.96045 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.94 36.01 0.36 -0.52 16 2 C -0.19 -2.56 6.16 -104.74 -0.65 -3.20 16 3 C -0.21 -2.53 10.87 -39.70 -0.43 -2.97 16 4 C -0.05 -0.61 12.09 29.42 0.36 -0.25 16 5 O -0.17 -2.46 10.65 5.73 0.06 -2.40 16 6 C 0.02 0.33 6.16 -35.62 -0.22 0.11 16 7 C 0.16 2.33 2.89 -68.86 -0.20 2.13 16 8 H 0.10 1.47 6.79 -51.93 -0.35 1.12 16 9 C -0.18 -2.26 9.14 37.16 0.34 -1.92 16 10 N -0.69 -11.97 6.23 -107.95 -0.67 -12.64 16 11 C 0.07 1.46 5.42 -3.82 -0.02 1.44 16 12 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 13 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 17 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 24 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 25 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 26 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 27 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.34 5.76 8.47 -39.29 -0.33 5.43 16 30 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 31 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 32 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 33 H 0.02 0.53 7.57 -51.92 -0.39 0.14 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -31.81 286.56 -6.35 -38.17 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.15 Total: 1.32 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.01 Total: -18.94 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.10 Total: -39.92 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: 0.06 Total: -2.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.81 -6.35 -38.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308664708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.429 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds