Wall clock time and date at job start Mon Mar 30 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41378 * 126.58388 * 2 1 4 4 C 1.34513 * 106.84076 * 180.23632 * 3 2 1 5 5 O 1.34300 * 108.42182 * 359.76846 * 4 3 2 6 6 C 1.34299 * 109.47729 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.79075 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.46920 * 165.01795 * 7 6 5 9 9 C 1.52999 * 109.47011 * 285.02096 * 7 6 5 10 10 N 1.46902 * 109.46835 * 45.01804 * 7 6 5 11 11 C 1.46906 * 110.99573 * 155.00105 * 10 7 6 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 7 13 13 C 1.50696 * 109.47332 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00534 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00615 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99691 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47000 * 89.99937 * 17 15 13 19 19 H 1.48502 * 109.47306 * 209.99785 * 17 15 13 20 20 H 1.48501 * 109.47411 * 330.00053 * 17 15 13 21 21 H 1.08992 * 109.47171 * 270.16326 * 1 2 3 22 22 H 1.08999 * 109.46621 * 30.16404 * 1 2 3 23 23 H 1.09002 * 109.47160 * 150.16141 * 1 2 3 24 24 H 1.07998 * 126.57602 * 359.97438 * 3 2 1 25 25 H 1.08006 * 125.78813 * 179.78643 * 4 3 2 26 26 H 1.09003 * 109.46954 * 59.99821 * 9 7 6 27 27 H 1.09000 * 109.47023 * 180.02562 * 9 7 6 28 28 H 1.09004 * 109.46766 * 299.99927 * 9 7 6 29 29 H 1.00896 * 111.00219 * 278.95745 * 10 7 6 30 30 H 1.09002 * 109.46991 * 299.99841 * 11 10 7 31 31 H 1.09000 * 109.47202 * 60.00133 * 11 10 7 32 32 H 1.08995 * 109.47213 * 300.00679 * 12 11 10 33 33 H 1.09008 * 109.47264 * 60.00068 * 12 11 10 34 34 H 0.97001 * 120.00228 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0053 5 8 3.5847 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0026 7 6 1.8521 -2.5165 0.0059 8 1 0.7971 -2.5617 0.2762 9 6 2.0478 -3.1171 -1.3876 10 7 2.6411 -3.2788 0.9829 11 6 1.8995 -4.4558 1.4549 12 6 2.7516 -5.2229 2.4679 13 6 1.9907 -6.4300 2.9527 14 1 0.9986 -6.6302 2.5756 15 6 2.5612 -7.2793 3.8768 16 7 1.8974 -8.3330 4.2994 17 14 4.2774 -6.9335 4.5285 18 1 4.1840 -6.0798 5.7400 19 1 4.9425 -8.2149 4.8760 20 1 5.0699 -6.2307 3.4877 21 1 -0.3633 0.0029 1.0276 22 1 -0.3632 0.8885 -0.5164 23 1 -0.3633 -0.8914 -0.5113 24 1 2.0368 2.1689 -0.0004 25 1 4.5061 1.2921 -0.0100 26 1 3.1028 -3.0717 -1.6578 27 1 1.7172 -4.1557 -1.3853 28 1 1.4624 -2.5514 -2.1125 29 1 3.5346 -3.5451 0.5972 30 1 0.9719 -4.1347 1.9290 31 1 1.6699 -5.1039 0.6091 32 1 3.6789 -5.5439 1.9936 33 1 2.9816 -4.5751 3.3139 34 1 2.2987 -8.9304 4.9499 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308664708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:45 Heat of formation + Delta-G solvation = -21.945130 kcal Electronic energy + Delta-G solvation = -14950.009541 eV Core-core repulsion = 12462.111679 eV Total energy + Delta-G solvation = -2487.897862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.43658 -38.32527 -35.45433 -34.86059 -33.22933 -30.81538 -29.68571 -27.86895 -25.98643 -23.81524 -22.45611 -21.87271 -20.41210 -18.96539 -17.93936 -16.97356 -16.41772 -16.40073 -15.78386 -15.68972 -14.75366 -14.56815 -14.31831 -13.94465 -13.83535 -13.67989 -13.34902 -13.23311 -13.01427 -12.89613 -12.50203 -12.25538 -12.04346 -11.76592 -11.59574 -11.42156 -10.77593 -10.44796 -9.45245 -9.15168 -8.30328 -6.34599 0.89067 1.37200 1.37479 1.50413 1.72474 2.23700 2.36116 3.05434 3.20490 3.78149 4.00783 4.09204 4.17740 4.22408 4.43361 4.51731 4.65207 4.69329 4.77217 4.85027 4.91721 4.95070 5.03190 5.10399 5.24535 5.28037 5.39172 5.47403 5.61346 5.72860 6.05402 6.23424 6.35561 6.43553 6.73471 7.30469 8.86178 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040336 B = 0.005610 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.995879 B = 4989.783118 C = 5251.867159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.223 4.223 4 C -0.050 4.050 5 O -0.187 6.187 6 C -0.009 4.009 7 C 0.162 3.838 8 H 0.105 0.895 9 C -0.173 4.173 10 N -0.692 5.692 11 C 0.088 3.912 12 C -0.005 4.005 13 C -0.532 4.532 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.249 1.249 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.167 0.833 25 H 0.233 0.767 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.344 0.656 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 18.902 -11.537 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.198 4.198 3 C -0.242 4.242 4 C -0.117 4.117 5 O -0.083 6.083 6 C -0.060 4.060 7 C 0.052 3.948 8 H 0.123 0.877 9 C -0.232 4.232 10 N -0.323 5.323 11 C -0.040 4.040 12 C -0.043 4.043 13 C -0.571 4.571 14 H 0.054 0.946 15 C -0.189 4.189 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.172 1.172 21 H 0.083 0.917 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.185 0.815 25 H 0.249 0.751 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.104 18.944 -10.897 21.956 hybrid contribution 0.446 -0.746 -0.134 0.879 sum 2.550 18.199 -11.032 21.433 Atomic orbital electron populations 1.20229 0.88135 1.03258 1.02321 1.20580 0.98204 0.92173 1.08830 1.21992 0.92615 1.00364 1.09208 1.24714 1.01064 0.80279 1.05639 1.84003 1.29194 1.23765 1.71356 1.22349 0.81158 0.96096 1.06409 1.20083 0.97888 0.85118 0.91745 0.87668 1.22435 1.02888 1.01515 0.96354 1.60533 1.06732 1.24719 1.40288 1.21683 0.96648 0.89088 0.96624 1.19439 0.95750 0.93780 0.95346 1.21387 1.02583 1.08780 1.24319 0.94569 1.25945 1.02288 0.94417 0.96266 1.70054 1.40210 1.15771 1.32977 0.85648 0.79637 0.77777 0.79488 1.19475 1.20799 1.17246 0.91652 0.90068 0.91383 0.81542 0.75068 0.92089 0.91622 0.90340 0.83714 0.92206 0.95360 0.96241 0.96405 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.94 71.24 0.71 -0.92 16 2 C -0.20 -4.87 6.16 -19.94 -0.12 -4.99 16 3 C -0.22 -4.78 10.87 22.19 0.24 -4.54 16 4 C -0.05 -1.06 12.09 66.97 0.81 -0.26 16 5 O -0.19 -5.28 10.65 -2.42 -0.03 -5.30 16 6 C -0.01 -0.26 6.16 24.84 0.15 -0.11 16 7 C 0.16 4.54 2.89 44.17 0.13 4.66 16 8 H 0.11 2.88 6.79 -2.39 -0.02 2.86 16 9 C -0.17 -4.10 9.14 71.98 0.66 -3.44 16 10 N -0.69 -23.50 6.23 -495.43 -3.09 -26.59 16 11 C 0.09 3.50 5.42 86.30 0.47 3.97 16 12 C -0.01 -0.26 4.30 29.85 0.13 -0.13 16 13 C -0.53 -31.05 9.66 25.60 0.25 -30.81 16 14 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 15 C 0.01 0.47 5.47 84.65 0.46 0.93 16 16 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 17 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.26 7.44 -2.39 -0.02 1.24 16 24 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 25 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 26 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.34 11.25 8.47 -89.70 -0.76 10.49 16 30 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 31 H 0.03 1.10 7.44 -2.39 -0.02 1.08 16 32 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 33 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -68.29 286.56 3.21 -65.08 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.26 Total: 14.98 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 3.88 Total: -35.64 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.79 Total: -86.29 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.03 Total: -5.30 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -68.29 3.21 -65.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308664708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.136 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds