Wall clock time and date at job start Mon Mar 30 2020 03:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 C 1.53002 * 109.47218 * 240.00352 * 2 1 3 5 5 C 1.52994 * 109.47259 * 119.99817 * 2 1 3 6 6 H 1.09002 * 109.47432 * 300.00399 * 5 2 1 7 7 N 1.46500 * 109.47243 * 179.97438 * 5 2 1 8 8 C 1.36930 * 119.99826 * 85.00181 * 7 5 2 9 9 H 1.08000 * 120.00035 * 0.02562 * 8 7 5 10 10 C 1.38820 * 120.00335 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99407 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00308 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47201 * 60.00104 * 12 10 8 14 14 H 1.48501 * 109.47076 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47185 * 299.99940 * 12 10 8 16 16 C 1.50702 * 109.46678 * 60.00192 * 5 2 1 17 17 C 1.34512 * 125.79146 * 259.99694 * 16 5 2 18 18 C 1.41376 * 106.84688 * 179.75198 * 17 16 5 19 19 C 1.34517 * 106.83881 * 0.37683 * 18 17 16 20 20 O 1.34305 * 125.78962 * 79.97916 * 16 5 2 21 21 H 1.08997 * 109.46881 * 299.99972 * 1 2 3 22 22 H 1.08999 * 109.47220 * 59.99783 * 1 2 3 23 23 H 1.08991 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47329 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47260 * 300.00192 * 3 2 1 26 26 H 1.09005 * 109.47526 * 60.00124 * 3 2 1 27 27 H 1.08997 * 109.46675 * 300.00276 * 4 2 1 28 28 H 1.09008 * 109.47147 * 59.99609 * 4 2 1 29 29 H 1.08995 * 109.47317 * 179.97438 * 4 2 1 30 30 H 0.96999 * 120.00305 * 265.00417 * 7 5 2 31 31 H 0.97000 * 119.99834 * 179.97438 * 11 10 8 32 32 H 1.08006 * 126.57585 * 359.97438 * 17 16 5 33 33 H 1.07998 * 126.58562 * 180.23597 * 18 17 16 34 34 H 1.08002 * 125.79423 * 179.89440 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6767 -0.2074 2.1392 7 7 3.5050 -0.7217 1.2489 8 6 4.1902 0.3529 1.7498 9 1 3.6505 1.2006 2.1454 10 6 5.5784 0.3523 1.7500 11 7 6.2360 -0.6816 1.2692 12 14 6.5130 1.8179 2.4339 13 1 6.1541 2.0113 3.8619 14 1 7.9729 1.5715 2.3189 15 1 6.1550 3.0363 1.6642 16 6 1.5377 -2.1420 1.2491 17 6 0.4875 -2.6051 1.9505 18 6 0.3697 -3.9817 1.6509 19 6 1.3602 -4.2795 0.7908 20 8 2.0625 -3.1606 0.5485 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 -1.7488 -1.2493 28 1 1.6767 -0.2073 -2.1393 29 1 3.1300 -0.7208 -1.2495 30 1 3.9897 -1.4832 0.8939 31 1 7.2060 -0.6819 1.2690 32 1 -0.1466 -2.0340 2.6125 33 1 -0.3717 -4.6640 2.0398 34 1 1.5548 -5.2522 0.3637 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308667055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:24 Heat of formation + Delta-G solvation = -2.471897 kcal Electronic energy + Delta-G solvation = -16043.495705 eV Core-core repulsion = 13556.442265 eV Total energy + Delta-G solvation = -2487.053439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.40340 -39.07495 -35.28542 -33.78038 -32.68536 -30.66951 -28.08272 -27.70997 -26.94320 -24.48265 -22.44203 -21.51215 -19.67989 -19.28637 -17.94677 -17.00276 -16.56631 -15.76749 -15.64695 -15.38802 -14.78532 -14.51061 -13.78442 -13.58074 -13.40047 -13.18716 -13.01562 -12.82570 -12.77755 -12.59113 -12.36611 -12.22163 -11.99082 -11.85030 -11.45864 -11.29277 -10.85479 -10.65803 -9.23267 -8.96365 -7.89104 -5.17418 0.98873 1.48762 1.51078 1.56628 1.85050 2.30876 2.58774 3.43904 3.79307 3.99092 4.09011 4.22092 4.30668 4.33834 4.48317 4.68902 4.86557 4.90685 4.92192 5.03218 5.04696 5.11315 5.17256 5.24839 5.26086 5.42480 5.43358 5.54989 5.62499 5.77875 5.82140 6.27625 6.44175 7.37224 8.07588 8.34082 9.34170 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.009695 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.218106 B = 2887.313723 C = 3370.429740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.123 4.123 5 C 0.257 3.743 6 H 0.070 0.930 7 N -0.726 5.726 8 C -0.222 4.222 9 H 0.083 0.917 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.279 1.279 14 H -0.301 1.301 15 H -0.276 1.276 16 C -0.006 4.006 17 C -0.226 4.226 18 C -0.216 4.216 19 C -0.064 4.064 20 O -0.192 6.192 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.374 0.626 31 H 0.248 0.752 32 H 0.158 0.842 33 H 0.173 0.827 34 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -2.573 -1.780 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.188 4.188 4 C -0.180 4.180 5 C 0.148 3.852 6 H 0.088 0.912 7 N -0.365 5.365 8 C -0.354 4.354 9 H 0.101 0.899 10 C -0.268 4.268 11 N -0.621 5.621 12 Si 0.796 3.204 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.203 1.203 16 C -0.057 4.057 17 C -0.246 4.246 18 C -0.234 4.234 19 C -0.131 4.131 20 O -0.088 6.088 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.206 0.794 31 H 0.057 0.943 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.304 -2.372 -1.874 13.643 hybrid contribution 1.038 0.201 0.324 1.106 sum -12.266 -2.171 -1.549 12.552 Atomic orbital electron populations 1.21814 0.93218 1.01669 1.02193 1.21116 0.95826 0.95885 0.95531 1.21790 1.01798 0.94602 1.00637 1.21648 1.00072 0.99298 0.96985 1.19145 0.83979 0.85158 0.96879 0.91242 1.42519 1.00227 1.20436 1.73319 1.19512 0.89064 0.96355 1.30459 0.89937 1.25498 0.97563 1.00346 1.03439 1.69839 1.06474 1.31955 1.53855 0.85310 0.77122 0.79520 0.78452 1.20508 1.22730 1.20257 1.23022 0.96148 0.90349 0.96162 1.21777 1.01097 0.96251 1.05440 1.22067 1.02517 0.96080 1.02772 1.24752 0.94487 0.90808 1.03084 1.84087 1.50689 1.17615 1.56423 0.92021 0.91806 0.92937 0.93115 0.92515 0.93136 0.93620 0.92329 0.95025 0.79419 0.94316 0.82466 0.80997 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.17 71.98 0.59 -3.03 16 2 C -0.08 -2.83 0.62 -52.18 -0.03 -2.86 16 3 C -0.13 -4.70 7.54 71.98 0.54 -4.16 16 4 C -0.12 -4.49 7.99 71.98 0.57 -3.91 16 5 C 0.26 10.36 2.18 44.24 0.10 10.46 16 6 H 0.07 2.79 8.07 -2.39 -0.02 2.77 16 7 N -0.73 -36.65 4.23 -326.50 -1.38 -38.03 16 8 C -0.22 -11.99 7.57 84.04 0.64 -11.35 16 9 H 0.08 4.21 7.40 -2.91 -0.02 4.18 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 11 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 12 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 C -0.01 -0.21 4.38 24.83 0.11 -0.10 16 17 C -0.23 -7.06 10.06 22.19 0.22 -6.84 16 18 C -0.22 -5.80 10.91 22.19 0.24 -5.55 16 19 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 20 O -0.19 -7.28 9.01 -2.58 -0.02 -7.30 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.45 6.71 -2.39 -0.02 1.43 16 24 H 0.05 2.21 6.01 -2.39 -0.01 2.20 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.04 1.64 6.32 -2.39 -0.02 1.63 16 28 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 30 H 0.37 21.07 7.51 -92.71 -0.70 20.38 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.23 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -64.24 276.99 5.55 -58.69 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.38 Total: 30.52 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.26 Total: -32.29 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -1.10 Total: -97.73 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.02 Total: -7.30 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -64.24 5.55 -58.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308667055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.218 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds