Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00319 * 2 1 4 4 H 1.48502 * 109.47025 * 274.97659 * 3 2 1 5 5 H 1.48505 * 109.47260 * 34.97556 * 3 2 1 6 6 H 1.48497 * 109.47357 * 154.97643 * 3 2 1 7 7 C 1.40050 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99840 * 173.88041 * 7 2 1 9 9 C 1.46371 * 120.00164 * 354.15389 * 7 2 1 10 10 O 1.21693 * 119.99966 * 5.76016 * 9 7 2 11 11 N 1.34778 * 120.00014 * 185.76178 * 9 7 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.87810 * 316.11494 * 12 11 9 14 14 C 1.53915 * 113.65305 * 184.80002 * 12 11 9 15 15 C 1.54110 * 87.15951 * 220.67987 * 14 12 11 16 16 C 1.53016 * 113.64847 * 87.41636 * 12 11 9 17 17 C 1.53558 * 115.13100 * 22.66037 * 16 12 11 18 18 C 1.55063 * 103.98879 * 206.86580 * 17 16 12 19 19 C 1.54947 * 102.85645 * 37.29598 * 18 17 16 20 20 C 1.53170 * 115.37767 * 256.64689 * 16 12 11 21 21 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00019 * 0.02562 * 11 9 7 23 23 H 1.09002 * 113.59176 * 335.23831 * 14 12 11 24 24 H 1.09002 * 113.59162 * 106.06308 * 14 12 11 25 25 H 1.09000 * 113.57028 * 270.29735 * 15 14 12 26 26 H 1.08996 * 113.79160 * 139.30543 * 15 14 12 27 27 H 1.08998 * 110.52469 * 325.49316 * 17 16 12 28 28 H 1.08996 * 110.52820 * 88.23815 * 17 16 12 29 29 H 1.08998 * 110.73626 * 278.95461 * 18 17 16 30 30 H 1.09002 * 110.89205 * 155.71085 * 18 17 16 31 31 H 1.09001 * 110.48398 * 203.76258 * 19 18 17 32 32 H 1.09003 * 110.48299 * 81.14117 * 19 18 17 33 33 H 1.08999 * 110.09419 * 248.86167 * 20 16 12 34 34 H 1.09004 * 110.09071 * 10.45616 * 20 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3831 2.1070 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4120 0.5922 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 -0.0992 9 6 1.2807 -2.4771 0.1302 10 8 0.0638 -2.4824 0.1321 11 7 1.9599 -3.6354 0.2476 12 6 1.2330 -4.9007 0.3780 13 1 0.3953 -4.8386 1.0726 14 6 2.1467 -6.1156 0.6194 15 6 1.2371 -6.8955 -0.3499 16 6 0.8717 -5.5420 -0.9635 17 6 1.7443 -5.1077 -2.1501 18 6 0.8200 -5.2899 -3.3817 19 6 -0.5653 -4.8555 -2.8403 20 6 -0.5912 -5.3896 -1.3911 21 1 -0.4850 0.8401 -0.0004 22 1 2.9298 -3.6311 0.2465 23 1 3.1625 -5.9779 0.2490 24 1 2.1157 -6.4881 1.6433 25 1 0.4009 -7.3926 0.1418 26 1 1.7798 -7.5518 -1.0302 27 1 2.0400 -4.0639 -2.0452 28 1 2.6224 -5.7481 -2.2333 29 1 0.8007 -6.3325 -3.6989 30 1 1.1336 -4.6442 -4.2019 31 1 -1.3637 -5.3085 -3.4280 32 1 -0.6543 -3.7691 -2.8480 33 1 -1.0940 -6.3561 -1.3571 34 1 -1.0998 -4.6792 -0.7392 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335806345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -37.260454 kcal Electronic energy + Delta-G solvation = -15976.231698 eV Core-core repulsion = 13487.669714 eV Total energy + Delta-G solvation = -2488.561984 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91663 -36.55897 -34.58250 -32.50667 -31.38996 -28.20660 -26.48743 -26.32462 -23.90713 -21.40413 -20.12202 -19.64679 -17.76942 -16.88917 -15.45865 -15.18775 -15.02955 -14.63091 -13.91200 -13.23536 -12.84743 -12.69398 -12.42061 -11.92544 -11.77907 -11.38985 -11.22556 -10.97671 -10.74376 -10.55066 -10.48697 -10.37013 -10.19649 -10.00498 -9.93933 -9.74129 -9.51251 -8.79821 -7.50365 -7.34791 -6.14116 -4.57905 3.15395 3.23031 3.26648 4.14329 4.63010 4.83903 4.98003 5.03128 5.21906 5.25147 5.45127 5.57015 5.70158 5.95899 5.98776 6.04229 6.11164 6.15136 6.16375 6.23925 6.26443 6.33994 6.42441 6.65432 6.73405 6.85180 6.96998 6.99140 7.06576 7.47850 7.99917 8.20817 8.40718 9.07932 9.63456 10.65892 10.86937 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.008579 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.195332 B = 3262.954244 C = 3531.492035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.558 3.442 10 O -0.575 6.575 11 N -0.754 5.754 12 C 0.153 3.847 13 H 0.087 0.913 14 C -0.148 4.148 15 C -0.129 4.129 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.106 4.106 21 H 0.266 0.734 22 H 0.378 0.622 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -9.887 -2.686 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.408 5.408 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.186 4.186 15 C -0.167 4.167 16 C -0.093 4.093 17 C -0.133 4.133 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.144 4.144 21 H 0.077 0.923 22 H 0.210 0.790 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.485 -9.761 -2.667 10.419 hybrid contribution 0.930 0.795 0.004 1.224 sum 3.415 -8.966 -2.663 9.957 Atomic orbital electron populations 1.70024 1.06976 1.27033 1.35639 1.25664 0.94543 1.00116 0.92685 0.86439 0.80348 0.81850 0.78587 1.19939 1.20477 1.18933 1.20895 0.93961 0.89813 1.53880 0.91686 1.18146 0.87203 0.82290 0.76255 1.90582 1.13946 1.86441 1.54798 1.46107 1.08174 1.05554 1.80943 1.21927 0.94840 0.83457 0.95130 0.89559 1.23283 0.98723 0.97402 0.99186 1.22831 0.99297 0.96057 0.98517 1.22396 0.95583 0.95111 0.96245 1.22013 0.96258 1.02423 0.92610 1.22477 0.96114 0.99787 0.97541 1.22319 0.96050 1.01497 0.95907 1.21975 0.95732 0.99915 0.96735 0.92284 0.78993 0.90289 0.91800 0.90556 0.91800 0.89884 0.92884 0.92612 0.92357 0.92986 0.91173 0.93199 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.85 55.55 0.66 -22.34 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.90 20.28 29.56 -169.99 -5.03 15.25 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.43 9.53 -35.63 -0.34 -15.77 16 8 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.55 7.59 -12.99 -0.10 15.45 16 10 O -0.58 -18.08 14.59 5.19 0.08 -18.00 16 11 N -0.75 -16.64 3.98 -54.74 -0.22 -16.85 16 12 C 0.15 2.95 3.37 -67.44 -0.23 2.72 16 13 H 0.09 1.85 7.96 -51.93 -0.41 1.44 16 14 C -0.15 -2.17 7.63 -25.68 -0.20 -2.37 16 15 C -0.13 -1.82 7.15 -26.13 -0.19 -2.00 16 16 C -0.09 -1.58 1.11 -154.11 -0.17 -1.75 16 17 C -0.10 -1.63 5.81 -25.35 -0.15 -1.78 16 18 C -0.12 -1.92 6.91 -24.61 -0.17 -2.09 16 19 C -0.12 -2.11 6.84 -24.93 -0.17 -2.29 16 20 C -0.11 -1.93 6.33 -25.87 -0.16 -2.09 16 21 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 22 H 0.38 7.47 8.60 -40.82 -0.35 7.12 16 23 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 26 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 27 H 0.08 1.68 6.85 -51.93 -0.36 1.32 16 28 H 0.05 0.79 7.88 -51.93 -0.41 0.39 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.05 0.79 7.91 -51.93 -0.41 0.38 16 34 H 0.08 1.70 7.54 -51.93 -0.39 1.31 16 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -32.09 276.90 -7.55 -39.64 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.25 Total: 7.71 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.97 Total: -9.57 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.44 Total: -39.19 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.08 Total: -18.00 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.09 -7.55 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335806345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.379 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds