Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00319 * 2 1 4 4 H 1.48502 * 109.47025 * 274.97659 * 3 2 1 5 5 H 1.48505 * 109.47260 * 34.97556 * 3 2 1 6 6 H 1.48497 * 109.47357 * 154.97643 * 3 2 1 7 7 C 1.40050 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99840 * 173.88041 * 7 2 1 9 9 C 1.46371 * 120.00164 * 354.15389 * 7 2 1 10 10 O 1.21693 * 119.99966 * 5.76016 * 9 7 2 11 11 N 1.34778 * 120.00014 * 185.76178 * 9 7 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.87810 * 316.11494 * 12 11 9 14 14 C 1.53915 * 113.65305 * 184.80002 * 12 11 9 15 15 C 1.54110 * 87.15951 * 220.67987 * 14 12 11 16 16 C 1.53016 * 113.64847 * 87.41636 * 12 11 9 17 17 C 1.53558 * 115.13100 * 22.66037 * 16 12 11 18 18 C 1.55063 * 103.98879 * 206.86580 * 17 16 12 19 19 C 1.54947 * 102.85645 * 37.29598 * 18 17 16 20 20 C 1.53170 * 115.37767 * 256.64689 * 16 12 11 21 21 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00019 * 0.02562 * 11 9 7 23 23 H 1.09002 * 113.59176 * 335.23831 * 14 12 11 24 24 H 1.09002 * 113.59162 * 106.06308 * 14 12 11 25 25 H 1.09000 * 113.57028 * 270.29735 * 15 14 12 26 26 H 1.08996 * 113.79160 * 139.30543 * 15 14 12 27 27 H 1.08998 * 110.52469 * 325.49316 * 17 16 12 28 28 H 1.08996 * 110.52820 * 88.23815 * 17 16 12 29 29 H 1.08998 * 110.73626 * 278.95461 * 18 17 16 30 30 H 1.09002 * 110.89205 * 155.71085 * 18 17 16 31 31 H 1.09001 * 110.48398 * 203.76258 * 19 18 17 32 32 H 1.09003 * 110.48299 * 81.14117 * 19 18 17 33 33 H 1.08999 * 110.09419 * 248.86167 * 20 16 12 34 34 H 1.09004 * 110.09071 * 10.45616 * 20 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3831 2.1070 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4120 0.5922 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 -0.0992 9 6 1.2807 -2.4771 0.1302 10 8 0.0638 -2.4824 0.1321 11 7 1.9599 -3.6354 0.2476 12 6 1.2330 -4.9007 0.3780 13 1 0.3953 -4.8386 1.0726 14 6 2.1467 -6.1156 0.6194 15 6 1.2371 -6.8955 -0.3499 16 6 0.8717 -5.5420 -0.9635 17 6 1.7443 -5.1077 -2.1501 18 6 0.8200 -5.2899 -3.3817 19 6 -0.5653 -4.8555 -2.8403 20 6 -0.5912 -5.3896 -1.3911 21 1 -0.4850 0.8401 -0.0004 22 1 2.9298 -3.6311 0.2465 23 1 3.1625 -5.9779 0.2490 24 1 2.1157 -6.4881 1.6433 25 1 0.4009 -7.3926 0.1418 26 1 1.7798 -7.5518 -1.0302 27 1 2.0400 -4.0639 -2.0452 28 1 2.6224 -5.7481 -2.2333 29 1 0.8007 -6.3325 -3.6989 30 1 1.1336 -4.6442 -4.2019 31 1 -1.3637 -5.3085 -3.4280 32 1 -0.6543 -3.7691 -2.8480 33 1 -1.0940 -6.3561 -1.3571 34 1 -1.0998 -4.6792 -0.7392 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335806345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = -58.493734 kcal Electronic energy + Delta-G solvation = -15977.152443 eV Core-core repulsion = 13487.669714 eV Total energy + Delta-G solvation = -2489.482728 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35361 -38.60596 -36.03234 -34.62580 -33.30821 -29.60815 -28.56571 -27.66117 -25.46097 -22.72021 -21.77938 -21.38391 -19.44255 -18.68298 -17.39530 -16.88029 -16.43176 -16.13705 -15.78999 -14.77453 -14.57000 -14.18581 -13.95694 -13.59275 -13.51518 -13.08138 -12.76962 -12.61516 -12.52530 -12.13899 -11.95954 -11.94294 -11.83254 -11.41266 -11.29904 -11.22310 -10.90215 -10.85966 -9.72082 -9.23569 -8.25881 -6.80291 1.37924 1.39381 1.54799 2.24811 2.52541 3.25013 3.57993 3.65842 3.73245 3.82253 3.94260 4.14127 4.30871 4.42406 4.61849 4.74081 4.80541 4.84058 4.88206 4.95533 5.00140 5.08292 5.10390 5.25488 5.32165 5.33847 5.45785 5.53929 5.61563 5.64412 5.94437 6.29910 6.44387 6.90734 7.66524 8.56934 8.75355 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.008579 C = 0.007927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.195332 B = 3262.954244 C = 3531.492035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.544 3.456 10 O -0.623 6.623 11 N -0.740 5.740 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.097 4.097 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.107 4.107 21 H 0.271 0.729 22 H 0.391 0.609 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -11.578 -3.346 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.615 4.615 8 H 0.100 0.900 9 C 0.347 3.653 10 O -0.510 6.510 11 N -0.393 5.393 12 C 0.020 3.980 13 H 0.068 0.932 14 C -0.166 4.166 15 C -0.146 4.146 16 C -0.099 4.099 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.145 4.145 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.820 -11.503 -3.323 12.907 hybrid contribution 0.167 1.279 0.224 1.309 sum 4.987 -10.223 -3.099 11.790 Atomic orbital electron populations 1.70201 1.09426 1.28576 1.37022 1.26900 0.95443 1.04758 0.91361 0.85096 0.79034 0.75613 0.79094 1.18872 1.19850 1.17213 1.21434 0.94961 0.90717 1.54362 0.89989 1.18462 0.86835 0.84109 0.75908 1.90546 1.15991 1.87539 1.56887 1.45749 1.08691 1.05406 1.79451 1.22234 0.95501 0.83695 0.96530 0.93155 1.23230 0.98693 0.93900 1.00734 1.22768 0.99482 0.94333 0.97996 1.22483 0.94799 0.97343 0.95270 1.21978 0.97629 1.00538 0.93067 1.22474 0.93824 1.01818 0.96903 1.22307 0.98773 0.98549 0.96411 1.21969 0.96655 0.99895 0.95958 0.91870 0.77526 0.88560 0.90176 0.89470 0.88699 0.94033 0.89682 0.89042 0.92193 0.90470 0.96103 0.90219 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.55 11.85 21.84 0.26 -51.29 16 2 C 0.03 1.72 5.50 85.31 0.47 2.18 16 3 Si 0.99 42.10 29.56 68.60 2.03 44.13 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.58 -33.45 9.53 24.83 0.24 -33.21 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.54 31.86 7.59 86.36 0.66 32.52 16 10 O -0.62 -42.00 14.59 -4.33 -0.06 -42.06 16 11 N -0.74 -33.55 3.98 -445.31 -1.77 -35.32 16 12 C 0.13 4.91 3.37 45.31 0.15 5.07 16 13 H 0.05 2.30 7.96 -2.38 -0.02 2.28 16 14 C -0.13 -3.37 7.63 31.28 0.24 -3.13 16 15 C -0.11 -2.62 7.15 30.98 0.22 -2.39 16 16 C -0.10 -3.27 1.11 -51.92 -0.06 -3.32 16 17 C -0.09 -3.08 5.81 31.49 0.18 -2.90 16 18 C -0.11 -3.35 6.91 31.97 0.22 -3.13 16 19 C -0.12 -4.39 6.84 31.76 0.22 -4.17 16 20 C -0.11 -3.97 6.33 31.15 0.20 -3.77 16 21 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 22 H 0.39 15.44 8.60 -92.71 -0.80 14.64 16 23 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 26 H 0.09 1.81 8.03 -2.39 -0.02 1.79 16 27 H 0.04 1.69 6.85 -2.39 -0.02 1.68 16 28 H 0.08 2.21 7.88 -2.39 -0.02 2.19 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 2.41 7.91 -2.39 -0.02 2.39 16 34 H 0.03 1.22 7.54 -2.38 -0.02 1.20 16 Total: -1.00 -75.72 276.90 3.47 -72.24 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.29 Total: 28.56 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.73 Total: -16.25 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.51 Total: -86.61 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.06 Total: -42.06 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -75.72 3.47 -72.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335806345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.751 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds