Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48505 * 109.46844 * 240.00014 * 3 2 1 5 5 H 1.48493 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47080 * 120.00451 * 3 2 1 7 7 C 1.40046 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00383 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00102 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00067 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00025 * 179.97438 * 11 9 7 13 13 H 1.09000 * 112.94250 * 333.13373 * 12 11 9 14 14 C 1.53921 * 113.65167 * 104.50476 * 12 11 9 15 15 C 1.53927 * 87.22338 * 89.62959 * 14 12 11 16 16 C 1.53012 * 86.85378 * 24.86535 * 15 14 12 17 17 C 1.53561 * 115.13290 * 218.16380 * 16 15 14 18 18 C 1.55065 * 103.98429 * 206.85246 * 17 16 15 19 19 C 1.54946 * 102.85723 * 37.30384 * 18 17 16 20 20 C 1.53169 * 115.37963 * 92.14801 * 16 15 14 21 21 H 0.97001 * 120.00305 * 359.97438 * 1 2 3 22 22 H 0.97007 * 120.00460 * 359.97438 * 11 9 7 23 23 H 1.09003 * 113.58844 * 335.04685 * 14 12 11 24 24 H 1.08997 * 113.59402 * 204.21451 * 14 12 11 25 25 H 1.08997 * 113.64859 * 139.35393 * 15 14 12 26 26 H 1.08994 * 113.64940 * 270.36797 * 15 14 12 27 27 H 1.09004 * 110.52765 * 325.47306 * 17 16 15 28 28 H 1.09002 * 110.53204 * 88.22806 * 17 16 15 29 29 H 1.08996 * 110.73501 * 278.95940 * 18 17 16 30 30 H 1.09008 * 110.89162 * 155.71316 * 18 17 16 31 31 H 1.09000 * 110.48130 * 203.76751 * 19 18 17 32 32 H 1.09001 * 110.59708 * 81.19476 * 19 18 17 33 33 H 1.09001 * 110.09105 * 248.87635 * 20 16 15 34 34 H 1.08997 * 110.09100 * 10.46281 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4806 -0.0017 11 7 1.9490 -3.6477 -0.0027 12 6 1.2165 -4.9164 -0.0033 13 1 0.2288 -4.8370 0.4508 14 6 1.2131 -5.6268 -1.3687 15 6 2.5078 -6.3295 -0.9224 16 6 2.0372 -6.0994 0.5153 17 6 3.1454 -5.7354 1.5140 18 6 2.5991 -6.2321 2.8775 19 6 1.8718 -7.5469 2.4992 20 6 1.2237 -7.2421 1.1305 21 1 -0.4850 0.8400 0.0004 22 1 2.9190 -3.6477 -0.0031 23 1 1.3522 -4.9509 -2.2125 24 1 0.3722 -6.3069 -1.5046 25 1 2.5540 -7.3813 -1.2043 26 1 3.4139 -5.7807 -1.1791 27 1 4.0716 -6.2521 1.2623 28 1 3.3019 -4.6568 1.5350 29 1 1.8986 -5.5109 3.2985 30 1 3.4139 -6.4287 3.5744 31 1 1.1072 -7.7861 3.2383 32 1 2.5841 -8.3671 2.4096 33 1 0.1875 -6.9327 1.2674 34 1 1.2705 -8.1225 0.4896 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335806346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -35.953674 kcal Electronic energy + Delta-G solvation = -15659.799270 eV Core-core repulsion = 13171.293952 eV Total energy + Delta-G solvation = -2488.505318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11020 -36.74710 -34.71294 -32.51315 -31.34697 -28.48006 -26.57665 -26.39394 -24.24751 -21.47096 -20.53186 -19.54808 -17.79236 -17.03380 -15.50439 -15.34100 -15.14904 -14.55568 -13.77270 -13.57401 -13.03030 -12.85261 -12.71982 -12.22289 -12.00011 -11.36725 -11.20739 -11.02250 -10.92644 -10.77478 -10.51575 -10.48145 -10.38209 -10.32589 -10.12991 -9.70046 -9.49219 -8.82486 -7.58847 -7.42832 -6.16328 -4.62238 3.16884 3.21655 3.23559 4.11399 4.57973 4.59827 4.73374 4.86674 5.09654 5.24608 5.35204 5.49738 5.54920 5.67310 5.83517 5.87335 5.94045 5.98695 6.05034 6.07424 6.11864 6.27414 6.39716 6.42500 6.51162 6.55104 6.65994 6.73352 6.87106 7.44975 7.96379 8.17348 8.36900 9.04333 9.57962 10.62976 10.82050 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.007129 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.131121 B = 3926.802028 C = 4111.525721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.745 5.745 12 C 0.155 3.845 13 H 0.085 0.915 14 C -0.160 4.160 15 C -0.126 4.126 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.098 4.098 21 H 0.268 0.732 22 H 0.380 0.620 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -11.530 2.055 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.399 5.399 12 C 0.047 3.953 13 H 0.103 0.897 14 C -0.199 4.199 15 C -0.163 4.163 16 C -0.097 4.097 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.136 4.136 21 H 0.079 0.921 22 H 0.213 0.787 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.992 -11.389 2.057 12.604 hybrid contribution 0.952 0.752 -0.097 1.217 sum 5.943 -10.637 1.960 12.341 Atomic orbital electron populations 1.70012 1.07037 1.27319 1.35331 1.25694 0.94601 1.00226 0.92637 0.86449 0.79828 0.81127 0.79418 1.19309 1.20564 1.19307 1.20850 0.93511 0.89455 1.54548 0.91555 1.18209 0.87222 0.82363 0.76148 1.90594 1.14112 1.86768 1.54754 1.45912 1.08239 1.04190 1.81556 1.21346 0.96027 0.83829 0.94096 0.89734 1.23450 0.97019 0.99544 0.99901 1.22872 0.98162 0.99756 0.95540 1.22359 0.96638 0.96509 0.94203 1.22261 0.97044 1.01862 0.94007 1.22484 0.99515 0.96880 0.97190 1.22382 0.99204 0.97624 0.96774 1.21851 0.99164 0.96797 0.95747 0.92082 0.78750 0.91446 0.90682 0.92198 0.90475 0.92095 0.90464 0.91383 0.92206 0.92115 0.92129 0.91459 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.28 11.83 55.55 0.66 -22.62 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -15.57 9.54 -35.63 -0.34 -15.91 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.56 15.96 7.75 -12.99 -0.10 15.86 16 10 O -0.58 -18.98 14.66 5.20 0.08 -18.90 16 11 N -0.75 -16.81 4.52 -54.73 -0.25 -17.06 16 12 C 0.15 3.05 3.77 -67.43 -0.25 2.80 16 13 H 0.08 1.91 7.26 -51.93 -0.38 1.53 16 14 C -0.16 -2.74 7.72 -25.77 -0.20 -2.94 16 15 C -0.13 -1.81 7.22 -26.24 -0.19 -2.00 16 16 C -0.10 -1.46 1.07 -154.11 -0.17 -1.62 16 17 C -0.11 -1.64 5.96 -25.35 -0.15 -1.79 16 18 C -0.12 -1.64 6.91 -24.61 -0.17 -1.81 16 19 C -0.12 -1.46 6.84 -24.93 -0.17 -1.63 16 20 C -0.10 -1.30 6.15 -25.87 -0.16 -1.46 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 22 H 0.38 7.65 7.30 -40.82 -0.30 7.35 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 26 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 27 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 28 H 0.08 1.25 6.06 -51.93 -0.31 0.94 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 34 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -32.98 275.52 -7.51 -40.49 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.13 Total: 6.78 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.99 Total: -8.11 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.41 Total: -39.68 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.08 Total: -18.90 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.98 -7.51 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335806346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.536 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds