Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48498 * 109.46860 * 269.99536 * 3 2 1 5 5 H 1.48495 * 109.47366 * 29.99850 * 3 2 1 6 6 H 1.48505 * 109.46889 * 150.00123 * 3 2 1 7 7 C 1.40044 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99875 * 0.02562 * 7 2 1 10 10 O 1.21694 * 120.00325 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00076 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00319 * 180.02562 * 11 9 7 13 13 C 1.52951 * 109.41364 * 205.00669 * 12 11 9 14 14 C 1.53179 * 109.44734 * 176.90754 * 13 12 11 15 15 C 1.53147 * 108.88655 * 56.56620 * 14 13 12 16 16 C 1.52841 * 117.67569 * 91.49469 * 15 14 13 17 17 C 1.52806 * 117.74825 * 160.37823 * 15 14 13 18 18 C 1.53147 * 115.00654 * 306.06267 * 15 14 13 19 19 C 1.52934 * 109.41289 * 84.64654 * 12 11 9 20 20 H 0.97003 * 119.99692 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99828 * 0.02562 * 11 9 7 22 22 H 1.09005 * 109.35206 * 324.82012 * 12 11 9 23 23 H 1.08998 * 109.47971 * 56.90443 * 13 12 11 24 24 H 1.09004 * 109.46635 * 296.89633 * 13 12 11 25 25 H 1.09001 * 109.56649 * 296.74231 * 14 13 12 26 26 H 1.08999 * 109.56825 * 176.39267 * 14 13 12 27 27 H 1.09002 * 117.50783 * 0.27023 * 16 15 14 28 28 H 1.09008 * 117.50386 * 215.22396 * 16 15 14 29 29 H 1.09001 * 117.50504 * 144.89350 * 17 15 14 30 30 H 1.09001 * 117.52712 * 359.83898 * 17 15 14 31 31 H 1.08996 * 109.57213 * 173.75440 * 18 15 14 32 32 H 1.08998 * 109.56916 * 294.11313 * 18 15 14 33 33 H 1.09005 * 109.47136 * 303.08353 * 19 12 11 34 34 H 1.08995 * 109.47675 * 63.09658 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4804 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6476 0.0005 12 6 1.2164 -4.9164 0.0000 13 6 2.0942 -6.0104 0.6099 14 6 1.3020 -7.3196 0.6806 15 6 0.8087 -7.6770 -0.7245 16 6 1.7013 -8.5715 -1.5842 17 6 0.4052 -9.1268 -0.9895 18 6 0.0141 -6.5750 -1.4314 19 6 0.8463 -5.2890 -1.4364 20 1 -0.4850 0.8401 -0.0004 21 1 2.9190 -3.6476 0.0009 22 1 0.3076 -4.8091 0.5922 23 1 2.3983 -5.7149 1.6140 24 1 2.9790 -6.1541 -0.0103 25 1 0.4482 -7.1941 1.3464 26 1 1.9453 -8.1158 1.0552 27 1 2.6411 -8.9119 -1.1493 28 1 1.7216 -8.3803 -2.6572 29 1 -0.4273 -9.3010 -1.6713 30 1 0.4922 -9.8329 -0.1637 31 1 -0.1965 -6.8775 -2.4572 32 1 -0.9220 -6.4020 -0.9005 33 1 0.2654 -4.4819 -1.8829 34 1 1.7554 -5.4467 -2.0167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336620558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -39.190101 kcal Electronic energy + Delta-G solvation = -15382.066485 eV Core-core repulsion = 12893.420825 eV Total energy + Delta-G solvation = -2488.645660 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30775 -37.16542 -34.62808 -32.42476 -31.16296 -30.61978 -26.97770 -25.26128 -22.55115 -22.42494 -20.91298 -19.38068 -18.53387 -16.97811 -15.29986 -15.28189 -15.22385 -14.41134 -13.98150 -13.55095 -13.20970 -12.60368 -12.42002 -12.12934 -11.97003 -11.76095 -11.56128 -11.35232 -11.02892 -10.97873 -10.74205 -10.42272 -10.23550 -10.16970 -9.87063 -9.71389 -9.46063 -8.81398 -7.54310 -7.40850 -6.13979 -4.59452 3.16304 3.23019 3.26460 3.84054 4.14163 4.62873 4.71976 4.80916 4.89275 5.05119 5.16182 5.43564 5.54966 5.61832 5.65422 5.80571 5.85792 5.89001 5.91446 6.09518 6.11982 6.15556 6.24826 6.32978 6.37040 6.47501 6.61127 6.88654 6.98165 7.47329 8.00584 8.20286 8.39652 9.06968 9.62062 10.65348 10.85069 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.067455 B = 0.005829 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.993438 B = 4802.282569 C = 4929.179141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.764 5.764 12 C 0.158 3.842 13 C -0.121 4.121 14 C -0.076 4.076 15 C -0.115 4.115 16 C -0.176 4.176 17 C -0.181 4.181 18 C -0.078 4.078 19 C -0.123 4.123 20 H 0.267 0.733 21 H 0.378 0.622 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -13.271 -1.172 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.418 5.418 12 C 0.051 3.949 13 C -0.159 4.159 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.213 4.213 17 C -0.218 4.218 18 C -0.116 4.116 19 C -0.162 4.162 20 H 0.078 0.922 21 H 0.209 0.791 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.868 -13.142 -1.158 13.501 hybrid contribution 0.975 0.743 -0.097 1.230 sum 3.843 -12.398 -1.256 13.041 Atomic orbital electron populations 1.70029 1.07023 1.27122 1.35633 1.25696 0.94587 1.00211 0.92647 0.86403 0.80168 0.81558 0.78780 1.19797 1.20499 1.18959 1.20909 0.93550 0.89562 1.54395 0.91558 1.18197 0.87226 0.82509 0.76153 1.90590 1.14056 1.86874 1.54827 1.46195 1.08379 1.04893 1.82314 1.20424 0.95632 0.84049 0.94758 1.21778 0.98612 0.94524 1.01008 1.21083 0.99451 0.96988 0.93886 1.21546 1.02016 0.91186 0.96748 1.22981 0.94502 1.04487 0.99310 1.22971 0.98724 0.96775 1.03357 1.21124 0.98028 0.93607 0.98856 1.21910 0.99435 0.96294 0.98523 0.92206 0.79092 0.90937 0.91738 0.92087 0.91414 0.92153 0.89191 0.89126 0.89128 0.89189 0.92391 0.91472 0.91220 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.83 55.55 0.66 -22.69 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.36 29.56 -169.99 -5.02 15.34 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.95 7.71 -12.99 -0.10 15.85 16 10 O -0.58 -18.88 14.68 5.19 0.08 -18.81 16 11 N -0.76 -17.32 5.07 -55.27 -0.28 -17.60 16 12 C 0.16 3.06 2.36 -67.99 -0.16 2.90 16 13 C -0.12 -1.82 5.39 -26.66 -0.14 -1.96 16 14 C -0.08 -0.99 5.67 -26.56 -0.15 -1.14 16 15 C -0.11 -1.48 1.97 -154.54 -0.31 -1.78 16 16 C -0.18 -1.98 9.93 -26.79 -0.27 -2.25 16 17 C -0.18 -1.97 9.99 -26.81 -0.27 -2.24 16 18 C -0.08 -1.16 5.67 -26.56 -0.15 -1.32 16 19 C -0.12 -2.22 5.49 -26.67 -0.15 -2.37 16 20 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 21 H 0.38 7.60 8.58 -40.82 -0.35 7.25 16 22 H 0.07 1.62 7.58 -51.93 -0.39 1.23 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -33.13 281.60 -7.81 -40.94 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.36 Total: 6.47 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.13 Total: -7.90 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.38 Total: -40.28 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.08 Total: -18.81 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.13 -7.81 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336620558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.753 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds