Wall clock time and date at job start Mon Mar 30 2020 02:37:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30678 * 1
3 3 Si 1.86803 * 119.99739 * 2 1
4 4 H 1.48498 * 109.46860 * 269.99536 * 3 2 1
5 5 H 1.48495 * 109.47366 * 29.99850 * 3 2 1
6 6 H 1.48505 * 109.46889 * 150.00123 * 3 2 1
7 7 C 1.40044 * 119.99999 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00136 * 179.97438 * 7 2 1
9 9 C 1.46375 * 119.99875 * 0.02562 * 7 2 1
10 10 O 1.21694 * 120.00325 * 0.02562 * 9 7 2
11 11 N 1.34773 * 120.00076 * 179.97438 * 9 7 2
12 12 C 1.46502 * 120.00319 * 180.02562 * 11 9 7
13 13 C 1.52951 * 109.41364 * 205.00669 * 12 11 9
14 14 C 1.53179 * 109.44734 * 176.90754 * 13 12 11
15 15 C 1.53147 * 108.88655 * 56.56620 * 14 13 12
16 16 C 1.52841 * 117.67569 * 91.49469 * 15 14 13
17 17 C 1.52806 * 117.74825 * 160.37823 * 15 14 13
18 18 C 1.53147 * 115.00654 * 306.06267 * 15 14 13
19 19 C 1.52934 * 109.41289 * 84.64654 * 12 11 9
20 20 H 0.97003 * 119.99692 * 0.02562 * 1 2 3
21 21 H 0.97003 * 119.99828 * 0.02562 * 11 9 7
22 22 H 1.09005 * 109.35206 * 324.82012 * 12 11 9
23 23 H 1.08998 * 109.47971 * 56.90443 * 13 12 11
24 24 H 1.09004 * 109.46635 * 296.89633 * 13 12 11
25 25 H 1.09001 * 109.56649 * 296.74231 * 14 13 12
26 26 H 1.08999 * 109.56825 * 176.39267 * 14 13 12
27 27 H 1.09002 * 117.50783 * 0.27023 * 16 15 14
28 28 H 1.09008 * 117.50386 * 215.22396 * 16 15 14
29 29 H 1.09001 * 117.50504 * 144.89350 * 17 15 14
30 30 H 1.09001 * 117.52712 * 359.83898 * 17 15 14
31 31 H 1.08996 * 109.57213 * 173.75440 * 18 15 14
32 32 H 1.08998 * 109.56916 * 294.11313 * 18 15 14
33 33 H 1.09005 * 109.47136 * 303.08353 * 19 12 11
34 34 H 1.08995 * 109.47675 * 63.09658 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2407 1.6178 0.0000
4 1 2.4883 2.0464 -1.4001
5 1 1.4382 2.6527 0.7000
6 1 3.5383 1.4402 0.7000
7 6 2.0070 -1.2128 0.0005
8 1 3.0870 -1.2128 0.0001
9 6 1.2751 -2.4804 0.0005
10 8 0.0582 -2.4805 -0.0004
11 7 1.9489 -3.6476 0.0005
12 6 1.2164 -4.9164 0.0000
13 6 2.0942 -6.0104 0.6099
14 6 1.3020 -7.3196 0.6806
15 6 0.8087 -7.6770 -0.7245
16 6 1.7013 -8.5715 -1.5842
17 6 0.4052 -9.1268 -0.9895
18 6 0.0141 -6.5750 -1.4314
19 6 0.8463 -5.2890 -1.4364
20 1 -0.4850 0.8401 -0.0004
21 1 2.9190 -3.6476 0.0009
22 1 0.3076 -4.8091 0.5922
23 1 2.3983 -5.7149 1.6140
24 1 2.9790 -6.1541 -0.0103
25 1 0.4482 -7.1941 1.3464
26 1 1.9453 -8.1158 1.0552
27 1 2.6411 -8.9119 -1.1493
28 1 1.7216 -8.3803 -2.6572
29 1 -0.4273 -9.3010 -1.6713
30 1 0.4922 -9.8329 -0.1637
31 1 -0.1965 -6.8775 -2.4572
32 1 -0.9220 -6.4020 -0.9005
33 1 0.2654 -4.4819 -1.8829
34 1 1.7554 -5.4467 -2.0167
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336620558.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:37:15
Heat of formation + Delta-G solvation = -61.448286 kcal
Electronic energy + Delta-G solvation = -15383.031672 eV
Core-core repulsion = 12893.420825 eV
Total energy + Delta-G solvation = -2489.610847 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.131 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.59636 -39.03049 -36.24526 -34.57684 -32.93837 -31.87528 -28.84685 -26.93293
-23.83944 -23.33584 -22.46001 -21.29323 -19.84017 -18.89082 -17.41541 -16.79549
-16.18524 -16.00003 -15.69137 -15.07178 -14.53331 -14.25499 -14.20125 -13.73650
-13.28793 -13.18723 -12.87751 -12.73705 -12.70000 -12.58217 -12.30982 -12.02249
-11.98102 -11.63822 -11.14887 -10.93201 -10.84977 -10.47319 -9.80512 -9.40367
-8.27916 -6.84935 1.39520 1.41479 1.56649 2.24943 2.48779 2.88151
3.20702 3.60342 3.71941 3.80761 3.97381 4.13058 4.21778 4.31436
4.40387 4.46788 4.57313 4.81683 4.85697 4.94709 5.01703 5.03363
5.10548 5.15682 5.20454 5.29221 5.32178 5.35675 5.45965 5.53362
5.90674 6.27028 6.35965 6.87496 7.60124 8.52358 8.69650
Molecular weight = 223.13amu
Principal moments of inertia in cm(-1)
A = 0.067455 B = 0.005829 C = 0.005679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 414.993438 B = 4802.282569 C = 4929.179141
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.824 5.824
2 C 0.028 3.972
3 Si 0.999 3.001
4 H -0.262 1.262
5 H -0.273 1.273
6 H -0.248 1.248
7 C -0.576 4.576
8 H 0.087 0.913
9 C 0.538 3.462
10 O -0.632 6.632
11 N -0.753 5.753
12 C 0.154 3.846
13 C -0.109 4.109
14 C -0.071 4.071
15 C -0.137 4.137
16 C -0.166 4.166
17 C -0.166 4.166
18 C -0.072 4.072
19 C -0.114 4.114
20 H 0.274 0.726
21 H 0.393 0.607
22 H 0.032 0.968
23 H 0.065 0.935
24 H 0.079 0.921
25 H 0.058 0.942
26 H 0.090 0.910
27 H 0.106 0.894
28 H 0.092 0.908
29 H 0.095 0.905
30 H 0.106 0.894
31 H 0.071 0.929
32 H 0.050 0.950
33 H 0.020 0.980
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.279 -14.450 -1.243 15.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.454 5.454
2 C -0.187 4.187
3 Si 0.818 3.182
4 H -0.186 1.186
5 H -0.198 1.198
6 H -0.172 1.172
7 C -0.613 4.613
8 H 0.105 0.895
9 C 0.342 3.658
10 O -0.519 6.519
11 N -0.406 5.406
12 C 0.049 3.951
13 C -0.147 4.147
14 C -0.109 4.109
15 C -0.137 4.137
16 C -0.203 4.203
17 C -0.203 4.203
18 C -0.110 4.110
19 C -0.153 4.153
20 H 0.083 0.917
21 H 0.226 0.774
22 H 0.050 0.950
23 H 0.084 0.916
24 H 0.097 0.903
25 H 0.077 0.923
26 H 0.109 0.891
27 H 0.124 0.876
28 H 0.111 0.889
29 H 0.113 0.887
30 H 0.125 0.875
31 H 0.090 0.910
32 H 0.068 0.932
33 H 0.039 0.961
34 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 5.237 -14.378 -1.230 15.352
hybrid contribution 0.223 1.047 -0.092 1.075
sum 5.460 -13.331 -1.322 14.466
Atomic orbital electron populations
1.70206 1.09582 1.28843 1.36744 1.26989 0.95511 1.04995 0.91182
0.85012 0.78773 0.75035 0.79401 1.18635 1.19788 1.17159 1.21467
0.94714 0.90276 1.54846 0.89537 1.18602 0.86869 0.84458 0.75881
1.90544 1.16229 1.87997 1.57154 1.45916 1.09100 1.04793 1.80785
1.20608 0.94922 0.84115 0.95454 1.21689 0.98428 0.93764 1.00842
1.21067 0.99348 0.96404 0.94086 1.21410 1.03818 0.91631 0.96861
1.23079 0.95209 1.02758 0.99210 1.23058 0.98768 0.94813 1.03642
1.21024 0.97117 0.92890 0.99967 1.21773 0.99773 0.96522 0.97271
0.91658 0.77372 0.94956 0.91581 0.90254 0.92349 0.89104 0.87614
0.88940 0.88658 0.87522 0.90995 0.93173 0.96094 0.91384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.74 11.83 21.83 0.26 -51.49 16
2 C 0.03 1.59 5.50 85.30 0.47 2.06 16
3 Si 1.00 41.74 29.56 68.60 2.03 43.77 16
4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16
6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16
7 C -0.58 -33.53 9.54 24.83 0.24 -33.29 16
8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16
9 C 0.54 32.21 7.71 86.36 0.67 32.87 16
10 O -0.63 -43.66 14.68 -4.33 -0.06 -43.72 16
11 N -0.75 -35.04 5.07 -447.00 -2.27 -37.31 16
12 C 0.15 6.19 2.36 44.95 0.11 6.30 16
13 C -0.11 -3.12 5.39 30.64 0.17 -2.96 16
14 C -0.07 -1.69 5.67 30.70 0.17 -1.51 16
15 C -0.14 -3.22 1.97 -52.20 -0.10 -3.33 16
16 C -0.17 -3.11 9.93 30.55 0.30 -2.81 16
17 C -0.17 -3.03 9.99 30.54 0.31 -2.73 16
18 C -0.07 -2.15 5.67 30.70 0.17 -1.97 16
19 C -0.11 -4.29 5.49 30.63 0.17 -4.12 16
20 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16
21 H 0.39 15.74 8.58 -92.71 -0.80 14.94 16
22 H 0.03 1.55 7.58 -2.38 -0.02 1.53 16
23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
24 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16
25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
26 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16
27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16
28 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16
29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16
31 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16
32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
33 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16
34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
Total: -1.00 -76.01 281.60 2.90 -73.10
By element:
Atomic # 1 Polarization: 26.85 SS G_CDS: 0.28 Total: 27.13 kcal
Atomic # 6 Polarization: -14.15 SS G_CDS: 2.67 Total: -11.49 kcal
Atomic # 7 Polarization: -86.78 SS G_CDS: -2.01 Total: -88.79 kcal
Atomic # 8 Polarization: -43.66 SS G_CDS: -0.06 Total: -43.72 kcal
Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal
Total: -76.01 2.90 -73.10 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336620558.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.656 kcal
(2) G-P(sol) polarization free energy of solvation -76.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds