Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48498 * 109.46860 * 269.99536 * 3 2 1 5 5 H 1.48495 * 109.47366 * 29.99850 * 3 2 1 6 6 H 1.48505 * 109.46889 * 150.00123 * 3 2 1 7 7 C 1.40044 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99875 * 0.02562 * 7 2 1 10 10 O 1.21694 * 120.00325 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00076 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00319 * 180.02562 * 11 9 7 13 13 C 1.52951 * 109.41364 * 205.00669 * 12 11 9 14 14 C 1.53179 * 109.44734 * 176.90754 * 13 12 11 15 15 C 1.53147 * 108.88655 * 56.56620 * 14 13 12 16 16 C 1.52841 * 117.67569 * 91.49469 * 15 14 13 17 17 C 1.52806 * 117.74825 * 160.37823 * 15 14 13 18 18 C 1.53147 * 115.00654 * 306.06267 * 15 14 13 19 19 C 1.52934 * 109.41289 * 84.64654 * 12 11 9 20 20 H 0.97003 * 119.99692 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99828 * 0.02562 * 11 9 7 22 22 H 1.09005 * 109.35206 * 324.82012 * 12 11 9 23 23 H 1.08998 * 109.47971 * 56.90443 * 13 12 11 24 24 H 1.09004 * 109.46635 * 296.89633 * 13 12 11 25 25 H 1.09001 * 109.56649 * 296.74231 * 14 13 12 26 26 H 1.08999 * 109.56825 * 176.39267 * 14 13 12 27 27 H 1.09002 * 117.50783 * 0.27023 * 16 15 14 28 28 H 1.09008 * 117.50386 * 215.22396 * 16 15 14 29 29 H 1.09001 * 117.50504 * 144.89350 * 17 15 14 30 30 H 1.09001 * 117.52712 * 359.83898 * 17 15 14 31 31 H 1.08996 * 109.57213 * 173.75440 * 18 15 14 32 32 H 1.08998 * 109.56916 * 294.11313 * 18 15 14 33 33 H 1.09005 * 109.47136 * 303.08353 * 19 12 11 34 34 H 1.08995 * 109.47675 * 63.09658 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4804 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6476 0.0005 12 6 1.2164 -4.9164 0.0000 13 6 2.0942 -6.0104 0.6099 14 6 1.3020 -7.3196 0.6806 15 6 0.8087 -7.6770 -0.7245 16 6 1.7013 -8.5715 -1.5842 17 6 0.4052 -9.1268 -0.9895 18 6 0.0141 -6.5750 -1.4314 19 6 0.8463 -5.2890 -1.4364 20 1 -0.4850 0.8401 -0.0004 21 1 2.9190 -3.6476 0.0009 22 1 0.3076 -4.8091 0.5922 23 1 2.3983 -5.7149 1.6140 24 1 2.9790 -6.1541 -0.0103 25 1 0.4482 -7.1941 1.3464 26 1 1.9453 -8.1158 1.0552 27 1 2.6411 -8.9119 -1.1493 28 1 1.7216 -8.3803 -2.6572 29 1 -0.4273 -9.3010 -1.6713 30 1 0.4922 -9.8329 -0.1637 31 1 -0.1965 -6.8775 -2.4572 32 1 -0.9220 -6.4020 -0.9005 33 1 0.2654 -4.4819 -1.8829 34 1 1.7554 -5.4467 -2.0167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336620558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -61.448286 kcal Electronic energy + Delta-G solvation = -15383.031672 eV Core-core repulsion = 12893.420825 eV Total energy + Delta-G solvation = -2489.610847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59636 -39.03049 -36.24526 -34.57684 -32.93837 -31.87528 -28.84685 -26.93293 -23.83944 -23.33584 -22.46001 -21.29323 -19.84017 -18.89082 -17.41541 -16.79549 -16.18524 -16.00003 -15.69137 -15.07178 -14.53331 -14.25499 -14.20125 -13.73650 -13.28793 -13.18723 -12.87751 -12.73705 -12.70000 -12.58217 -12.30982 -12.02249 -11.98102 -11.63822 -11.14887 -10.93201 -10.84977 -10.47319 -9.80512 -9.40367 -8.27916 -6.84935 1.39520 1.41479 1.56649 2.24943 2.48779 2.88151 3.20702 3.60342 3.71941 3.80761 3.97381 4.13058 4.21778 4.31436 4.40387 4.46788 4.57313 4.81683 4.85697 4.94709 5.01703 5.03363 5.10548 5.15682 5.20454 5.29221 5.32178 5.35675 5.45965 5.53362 5.90674 6.27028 6.35965 6.87496 7.60124 8.52358 8.69650 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.067455 B = 0.005829 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.993438 B = 4802.282569 C = 4929.179141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.753 5.753 12 C 0.154 3.846 13 C -0.109 4.109 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.166 4.166 17 C -0.166 4.166 18 C -0.072 4.072 19 C -0.114 4.114 20 H 0.274 0.726 21 H 0.393 0.607 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.020 0.980 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -14.450 -1.243 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.613 4.613 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.519 6.519 11 N -0.406 5.406 12 C 0.049 3.951 13 C -0.147 4.147 14 C -0.109 4.109 15 C -0.137 4.137 16 C -0.203 4.203 17 C -0.203 4.203 18 C -0.110 4.110 19 C -0.153 4.153 20 H 0.083 0.917 21 H 0.226 0.774 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.237 -14.378 -1.230 15.352 hybrid contribution 0.223 1.047 -0.092 1.075 sum 5.460 -13.331 -1.322 14.466 Atomic orbital electron populations 1.70206 1.09582 1.28843 1.36744 1.26989 0.95511 1.04995 0.91182 0.85012 0.78773 0.75035 0.79401 1.18635 1.19788 1.17159 1.21467 0.94714 0.90276 1.54846 0.89537 1.18602 0.86869 0.84458 0.75881 1.90544 1.16229 1.87997 1.57154 1.45916 1.09100 1.04793 1.80785 1.20608 0.94922 0.84115 0.95454 1.21689 0.98428 0.93764 1.00842 1.21067 0.99348 0.96404 0.94086 1.21410 1.03818 0.91631 0.96861 1.23079 0.95209 1.02758 0.99210 1.23058 0.98768 0.94813 1.03642 1.21024 0.97117 0.92890 0.99967 1.21773 0.99773 0.96522 0.97271 0.91658 0.77372 0.94956 0.91581 0.90254 0.92349 0.89104 0.87614 0.88940 0.88658 0.87522 0.90995 0.93173 0.96094 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.74 11.83 21.83 0.26 -51.49 16 2 C 0.03 1.59 5.50 85.30 0.47 2.06 16 3 Si 1.00 41.74 29.56 68.60 2.03 43.77 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.58 -33.53 9.54 24.83 0.24 -33.29 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.54 32.21 7.71 86.36 0.67 32.87 16 10 O -0.63 -43.66 14.68 -4.33 -0.06 -43.72 16 11 N -0.75 -35.04 5.07 -447.00 -2.27 -37.31 16 12 C 0.15 6.19 2.36 44.95 0.11 6.30 16 13 C -0.11 -3.12 5.39 30.64 0.17 -2.96 16 14 C -0.07 -1.69 5.67 30.70 0.17 -1.51 16 15 C -0.14 -3.22 1.97 -52.20 -0.10 -3.33 16 16 C -0.17 -3.11 9.93 30.55 0.30 -2.81 16 17 C -0.17 -3.03 9.99 30.54 0.31 -2.73 16 18 C -0.07 -2.15 5.67 30.70 0.17 -1.97 16 19 C -0.11 -4.29 5.49 30.63 0.17 -4.12 16 20 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 21 H 0.39 15.74 8.58 -92.71 -0.80 14.94 16 22 H 0.03 1.55 7.58 -2.38 -0.02 1.53 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -76.01 281.60 2.90 -73.10 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.28 Total: 27.13 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 2.67 Total: -11.49 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -2.01 Total: -88.79 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.06 Total: -43.72 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -76.01 2.90 -73.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336620558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.656 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds