Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.55923 * 115.84923 * 2 1 4 4 C 1.54608 * 104.58660 * 159.96017 * 3 2 1 5 5 C 1.55983 * 104.46479 * 0.32872 * 4 3 2 6 6 H 1.08994 * 116.08017 * 199.12821 * 5 4 3 7 7 C 1.55959 * 104.30315 * 69.20714 * 5 4 3 8 8 C 1.52174 * 104.87197 * 289.61854 * 7 5 4 9 9 N 1.27959 * 127.32953 * 180.32609 * 8 7 5 10 10 O 1.41596 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.56929 * 116.14065 * 117.87467 * 2 1 3 12 12 C 1.53003 * 112.15527 * 63.52758 * 11 2 1 13 13 C 1.50703 * 112.08823 * 296.86060 * 11 2 1 14 14 H 1.07994 * 119.99603 * 12.21363 * 13 11 2 15 15 C 1.37875 * 119.99838 * 192.21508 * 13 11 2 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.08996 * 109.47487 * 302.12223 * 1 2 3 22 22 H 1.08994 * 109.47119 * 62.12622 * 1 2 3 23 23 H 1.09001 * 109.46696 * 182.12301 * 1 2 3 24 24 H 1.09003 * 110.41621 * 41.18171 * 3 2 1 25 25 H 1.09000 * 110.41255 * 278.73626 * 3 2 1 26 26 H 1.09001 * 110.43672 * 241.58596 * 4 3 2 27 27 H 1.08994 * 110.44097 * 119.07723 * 4 3 2 28 28 H 1.08994 * 110.36059 * 48.46719 * 7 5 4 29 29 H 1.09004 * 110.35519 * 170.77360 * 7 5 4 30 30 H 0.96697 * 114.00437 * 180.02562 * 10 9 8 31 31 H 1.08997 * 109.46655 * 293.85475 * 12 11 2 32 32 H 1.08997 * 109.47136 * 53.85794 * 12 11 2 33 33 H 1.09002 * 109.46830 * 173.85819 * 12 11 2 34 34 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2098 1.4032 0.0000 4 6 3.6446 1.1408 0.5127 5 6 3.6931 -0.3979 0.7641 6 1 4.4877 -0.7512 1.4212 7 6 3.6326 -1.0236 -0.6631 8 6 2.2136 -0.7599 -1.1454 9 7 1.6995 -1.0997 -2.2668 10 8 2.4775 -1.8027 -3.2183 11 6 2.2213 -0.6587 1.2453 12 6 1.9085 -2.1523 1.3561 13 6 1.9046 0.0747 2.5232 14 1 1.1201 0.8167 2.5396 15 6 2.6165 -0.2015 3.6712 16 7 3.5716 -1.1054 3.6512 17 14 2.2234 0.7070 5.2553 18 1 1.1149 1.6653 5.0143 19 1 3.4266 1.4475 5.7129 20 1 1.8167 -0.2690 6.2979 21 1 -0.3634 0.5464 0.8703 22 1 -0.3633 0.4804 -0.9084 23 1 -0.3633 -1.0270 0.0381 24 1 1.6837 2.0806 0.6726 25 1 2.2359 1.8130 -1.0097 26 1 3.8223 1.6838 1.4410 27 1 4.3768 1.4263 -0.2424 28 1 4.3531 -0.5378 -1.3210 29 1 3.8239 -2.0957 -0.6156 30 1 2.0037 -2.0153 -4.0340 31 1 0.8466 -2.2866 1.5622 32 1 2.1623 -2.6472 0.4188 33 1 2.4937 -2.5868 2.1666 34 1 3.7754 -1.5775 2.8287 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383546714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = 2.618483 kcal Electronic energy + Delta-G solvation = -16518.058971 eV Core-core repulsion = 14031.226267 eV Total energy + Delta-G solvation = -2486.832704 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16878 -36.11897 -33.25791 -31.67089 -30.97721 -29.72110 -26.95715 -24.84972 -24.43395 -22.73904 -20.52733 -18.54142 -17.93350 -16.28061 -16.06260 -15.00571 -14.47146 -14.21152 -13.72950 -13.34644 -12.83626 -12.68427 -12.36529 -11.87463 -11.70310 -11.32312 -11.09822 -11.05032 -10.79039 -10.64828 -10.28227 -10.22211 -10.09860 -9.82699 -9.69575 -9.22919 -9.07138 -8.69163 -8.38993 -8.31146 -6.28368 -4.05317 2.62880 3.42734 3.45518 3.46459 3.58845 4.51434 5.09265 5.31036 5.38802 5.45403 5.70343 5.83702 5.88013 5.95548 6.13965 6.23991 6.33145 6.38905 6.42247 6.55533 6.59337 6.69725 6.76033 6.79965 6.86040 6.98321 7.09628 7.15975 7.29415 7.35887 7.58673 8.20972 8.28987 8.43223 8.87874 9.64874 11.04642 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040443 B = 0.010301 C = 0.010028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.171935 B = 2717.519078 C = 2791.586296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.010 4.010 3 C -0.092 4.092 4 C -0.101 4.101 5 C -0.100 4.100 6 H 0.103 0.897 7 C -0.118 4.118 8 C 0.157 3.843 9 N -0.353 5.353 10 O -0.432 6.432 11 C 0.078 3.922 12 C -0.138 4.138 13 C -0.572 4.572 14 H 0.055 0.945 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 1.067 2.933 18 H -0.290 1.290 19 H -0.289 1.289 20 H -0.289 1.289 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.391 0.609 31 H 0.041 0.959 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 2.079 -6.639 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.011 4.011 3 C -0.130 4.130 4 C -0.138 4.138 5 C -0.119 4.119 6 H 0.121 0.879 7 C -0.158 4.158 8 C -0.035 4.035 9 N -0.099 5.099 10 O -0.333 6.333 11 C 0.077 3.923 12 C -0.195 4.195 13 C -0.610 4.610 14 H 0.073 0.927 15 C -0.178 4.178 16 N -0.554 5.554 17 Si 0.896 3.104 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.216 1.216 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.984 2.255 -5.221 6.023 hybrid contribution 0.070 -0.519 -2.038 2.104 sum -1.914 1.736 -7.259 7.705 Atomic orbital electron populations 1.21211 0.92930 1.01617 1.00982 1.22096 0.94168 0.94523 0.90350 1.22346 0.96697 0.95161 0.98823 1.22371 0.94781 0.96915 0.99747 1.23762 1.01512 0.94317 0.92330 0.87888 1.22254 0.93334 1.01261 0.98947 1.26545 0.96422 0.90010 0.90540 1.76083 1.20561 1.12450 1.00805 1.88447 1.39366 1.76049 1.29445 1.20271 0.88831 0.91696 0.91550 1.21866 1.00564 0.98058 0.99045 1.21605 1.21558 1.24029 0.93782 0.92704 1.25605 0.93778 0.96688 1.01695 1.70767 1.29398 1.23407 1.31813 0.83567 0.75703 0.75679 0.75432 1.21563 1.21525 1.21565 0.91368 0.93560 0.92890 0.90634 0.93965 0.90977 0.94221 0.91431 0.90857 0.76329 0.93996 0.96161 0.91919 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.24 37.16 0.34 -1.70 16 2 C -0.01 -0.19 0.90 -150.55 -0.13 -0.33 16 3 C -0.09 -1.76 5.33 -24.32 -0.13 -1.89 16 4 C -0.10 -2.00 5.67 -24.29 -0.14 -2.14 16 5 C -0.10 -2.15 3.81 -85.26 -0.32 -2.47 16 6 H 0.10 2.39 6.40 -51.93 -0.33 2.06 16 7 C -0.12 -2.37 5.07 -25.57 -0.13 -2.50 16 8 C 0.16 3.18 5.41 -76.78 -0.42 2.77 16 9 N -0.35 -6.95 12.01 36.63 0.44 -6.51 16 10 O -0.43 -7.57 14.63 -11.47 -0.17 -7.74 16 11 C 0.08 1.75 0.27 -151.35 -0.04 1.71 16 12 C -0.14 -3.13 8.12 37.16 0.30 -2.83 16 13 C -0.57 -14.18 6.49 -34.44 -0.22 -14.40 16 14 H 0.05 1.37 7.08 -52.49 -0.37 1.00 16 15 C 0.03 0.70 5.26 -17.82 -0.09 0.61 16 16 N -0.92 -25.15 12.81 55.43 0.71 -24.44 16 17 Si 1.07 23.73 29.90 -169.99 -5.08 18.64 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 21 H 0.07 1.25 7.55 -51.93 -0.39 0.86 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 24 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 25 H 0.04 0.75 8.04 -51.93 -0.42 0.34 16 26 H 0.07 1.51 7.95 -51.93 -0.41 1.10 16 27 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 28 H 0.07 1.29 7.84 -51.93 -0.41 0.88 16 29 H 0.07 1.48 7.39 -51.93 -0.38 1.10 16 30 H 0.39 4.70 9.28 45.56 0.42 5.12 16 31 H 0.04 0.93 7.84 -51.93 -0.41 0.52 16 32 H 0.02 0.43 5.85 -51.93 -0.30 0.12 16 33 H 0.06 1.53 5.97 -51.93 -0.31 1.22 16 34 H 0.28 7.45 3.84 -40.82 -0.16 7.29 16 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -28.16 262.83 -5.03 -33.19 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.91 Total: 6.08 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.98 Total: -23.19 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 1.15 Total: -30.95 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.17 Total: -7.74 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.08 Total: 18.64 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.16 -5.03 -33.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383546714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.811 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds