Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.55923 * 115.84923 * 2 1 4 4 C 1.54608 * 104.58660 * 159.96017 * 3 2 1 5 5 C 1.55983 * 104.46479 * 0.32872 * 4 3 2 6 6 H 1.08994 * 116.08017 * 199.12821 * 5 4 3 7 7 C 1.55959 * 104.30315 * 69.20714 * 5 4 3 8 8 C 1.52174 * 104.87197 * 289.61854 * 7 5 4 9 9 N 1.27959 * 127.32953 * 180.32609 * 8 7 5 10 10 O 1.41596 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.56929 * 116.14065 * 117.87467 * 2 1 3 12 12 C 1.53003 * 112.15527 * 63.52758 * 11 2 1 13 13 C 1.50703 * 112.08823 * 296.86060 * 11 2 1 14 14 H 1.07994 * 119.99603 * 12.21363 * 13 11 2 15 15 C 1.37875 * 119.99838 * 192.21508 * 13 11 2 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.08996 * 109.47487 * 302.12223 * 1 2 3 22 22 H 1.08994 * 109.47119 * 62.12622 * 1 2 3 23 23 H 1.09001 * 109.46696 * 182.12301 * 1 2 3 24 24 H 1.09003 * 110.41621 * 41.18171 * 3 2 1 25 25 H 1.09000 * 110.41255 * 278.73626 * 3 2 1 26 26 H 1.09001 * 110.43672 * 241.58596 * 4 3 2 27 27 H 1.08994 * 110.44097 * 119.07723 * 4 3 2 28 28 H 1.08994 * 110.36059 * 48.46719 * 7 5 4 29 29 H 1.09004 * 110.35519 * 170.77360 * 7 5 4 30 30 H 0.96697 * 114.00437 * 180.02562 * 10 9 8 31 31 H 1.08997 * 109.46655 * 293.85475 * 12 11 2 32 32 H 1.08997 * 109.47136 * 53.85794 * 12 11 2 33 33 H 1.09002 * 109.46830 * 173.85819 * 12 11 2 34 34 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2098 1.4032 0.0000 4 6 3.6446 1.1408 0.5127 5 6 3.6931 -0.3979 0.7641 6 1 4.4877 -0.7512 1.4212 7 6 3.6326 -1.0236 -0.6631 8 6 2.2136 -0.7599 -1.1454 9 7 1.6995 -1.0997 -2.2668 10 8 2.4775 -1.8027 -3.2183 11 6 2.2213 -0.6587 1.2453 12 6 1.9085 -2.1523 1.3561 13 6 1.9046 0.0747 2.5232 14 1 1.1201 0.8167 2.5396 15 6 2.6165 -0.2015 3.6712 16 7 3.5716 -1.1054 3.6512 17 14 2.2234 0.7070 5.2553 18 1 1.1149 1.6653 5.0143 19 1 3.4266 1.4475 5.7129 20 1 1.8167 -0.2690 6.2979 21 1 -0.3634 0.5464 0.8703 22 1 -0.3633 0.4804 -0.9084 23 1 -0.3633 -1.0270 0.0381 24 1 1.6837 2.0806 0.6726 25 1 2.2359 1.8130 -1.0097 26 1 3.8223 1.6838 1.4410 27 1 4.3768 1.4263 -0.2424 28 1 4.3531 -0.5378 -1.3210 29 1 3.8239 -2.0957 -0.6156 30 1 2.0037 -2.0153 -4.0340 31 1 0.8466 -2.2866 1.5622 32 1 2.1623 -2.6472 0.4188 33 1 2.4937 -2.5868 2.1666 34 1 3.7754 -1.5775 2.8287 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383546714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = -14.419373 kcal Electronic energy + Delta-G solvation = -16518.797788 eV Core-core repulsion = 14031.226267 eV Total energy + Delta-G solvation = -2487.571521 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80452 -37.58760 -35.08105 -33.23694 -32.53699 -31.47145 -28.59549 -26.75788 -25.99120 -24.45925 -22.10935 -20.26948 -19.60727 -17.98515 -17.57627 -16.55943 -16.11911 -15.84851 -15.49171 -15.01339 -14.45382 -14.19953 -13.93096 -13.61786 -13.28874 -13.05699 -12.85534 -12.66756 -12.55570 -12.41595 -11.92120 -11.81193 -11.75202 -11.44120 -11.36325 -10.81122 -10.66158 -10.34909 -10.23291 -10.17346 -8.30004 -6.06649 1.07914 1.63390 1.69047 1.84161 2.06064 2.69229 3.37338 3.53649 3.80056 3.82685 4.06726 4.26175 4.30539 4.42277 4.60287 4.61941 4.75349 4.79999 4.81845 4.92553 5.00521 5.05656 5.12367 5.17090 5.26220 5.36117 5.40140 5.50694 5.65429 5.77860 6.04086 6.32212 6.45829 6.87359 6.92155 7.69414 9.04293 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040443 B = 0.010301 C = 0.010028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.171935 B = 2717.519078 C = 2791.586296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.008 4.008 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.103 4.103 6 H 0.079 0.921 7 C -0.109 4.109 8 C 0.147 3.853 9 N -0.353 5.353 10 O -0.432 6.432 11 C 0.064 3.936 12 C -0.127 4.127 13 C -0.566 4.566 14 H 0.052 0.948 15 C -0.018 4.018 16 N -0.946 5.946 17 Si 1.104 2.896 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.292 1.292 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.414 0.586 31 H 0.038 0.962 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 2.937 -7.961 8.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.010 4.010 3 C -0.126 4.126 4 C -0.135 4.135 5 C -0.123 4.123 6 H 0.097 0.903 7 C -0.149 4.149 8 C -0.045 4.045 9 N -0.097 5.097 10 O -0.339 6.339 11 C 0.063 3.937 12 C -0.185 4.185 13 C -0.604 4.604 14 H 0.070 0.930 15 C -0.217 4.217 16 N -0.586 5.586 17 Si 0.929 3.071 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.219 1.219 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.723 3.122 -6.567 7.764 hybrid contribution 0.283 -0.854 -1.741 1.959 sum -2.440 2.268 -8.307 8.950 Atomic orbital electron populations 1.21197 0.91772 1.01550 1.01896 1.22053 0.95041 0.94737 0.89144 1.22330 0.95768 0.94664 0.99841 1.22341 0.96145 0.95353 0.99686 1.23611 1.00004 0.95762 0.92882 0.90332 1.22130 0.94005 1.00770 0.97952 1.26416 0.96184 0.90962 0.90968 1.75952 1.20967 1.11923 1.00815 1.88427 1.39754 1.75453 1.30292 1.20300 0.90195 0.91221 0.92001 1.21739 0.99830 0.98549 0.98414 1.21817 1.20577 1.23321 0.94673 0.93004 1.26619 0.93642 0.96953 1.04475 1.70837 1.30984 1.24956 1.31793 0.83070 0.76016 0.75111 0.72854 1.19698 1.21488 1.21867 0.91496 0.91656 0.93371 0.90624 0.92080 0.92636 0.92144 0.90246 0.91557 0.73586 0.94250 0.95440 0.94268 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.74 9.24 71.98 0.66 -3.08 16 2 C -0.01 -0.31 0.90 -49.62 -0.04 -0.35 16 3 C -0.09 -3.16 5.33 32.15 0.17 -2.99 16 4 C -0.10 -3.76 5.67 32.18 0.18 -3.58 16 5 C -0.10 -4.40 3.81 -7.32 -0.03 -4.43 16 6 H 0.08 3.74 6.40 -2.39 -0.02 3.72 16 7 C -0.11 -4.21 5.07 31.35 0.16 -4.05 16 8 C 0.15 5.62 5.41 47.93 0.26 5.88 16 9 N -0.35 -12.84 12.01 -37.90 -0.46 -13.30 16 10 O -0.43 -13.73 14.63 -38.77 -0.57 -14.30 16 11 C 0.06 2.85 0.27 -50.14 -0.01 2.84 16 12 C -0.13 -5.82 8.12 71.98 0.58 -5.24 16 13 C -0.57 -27.88 6.49 25.60 0.17 -27.71 16 14 H 0.05 2.54 7.08 -2.91 -0.02 2.52 16 15 C -0.02 -0.91 5.26 84.65 0.45 -0.46 16 16 N -0.95 -52.93 12.81 21.45 0.27 -52.66 16 17 Si 1.10 47.70 29.90 68.60 2.05 49.75 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 H 0.07 2.33 7.55 -2.39 -0.02 2.31 16 22 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 24 H 0.08 2.71 7.82 -2.39 -0.02 2.69 16 25 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16 26 H 0.05 2.29 7.95 -2.39 -0.02 2.27 16 27 H 0.06 2.04 7.85 -2.39 -0.02 2.02 16 28 H 0.08 2.85 7.84 -2.39 -0.02 2.83 16 29 H 0.07 2.62 7.39 -2.39 -0.02 2.61 16 30 H 0.41 8.48 9.28 -74.06 -0.69 7.79 16 31 H 0.04 1.75 7.84 -2.39 -0.02 1.73 16 32 H 0.03 1.17 5.85 -2.39 -0.01 1.15 16 33 H 0.04 1.94 5.97 -2.39 -0.01 1.93 16 34 H 0.27 15.02 3.84 -92.71 -0.36 14.67 16 Total: -1.00 -58.23 262.83 4.68 -53.55 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.83 Total: 20.12 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 2.55 Total: -43.17 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.18 Total: -65.95 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.57 Total: -14.30 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.05 Total: 49.75 kcal Total: -58.23 4.68 -53.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383546714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.133 kcal (2) G-P(sol) polarization free energy of solvation -58.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds