Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00334 * 2 1 4 4 H 1.48499 * 109.47173 * 240.00026 * 3 2 1 5 5 H 1.48503 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47337 * 119.99864 * 3 2 1 7 7 C 1.37885 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47048 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47048 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47346 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00204 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46862 * 180.02562 * 14 13 12 16 16 C 1.41385 * 126.58187 * 90.00668 * 15 14 13 17 17 C 1.34512 * 106.83926 * 180.25995 * 16 15 14 18 18 O 1.34305 * 108.42433 * 359.63135 * 17 16 15 19 19 C 1.34305 * 109.47225 * 0.37505 * 18 17 16 20 20 H 0.96995 * 119.99529 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46826 * 60.00788 * 9 7 2 22 22 H 1.09000 * 109.47154 * 300.00468 * 9 7 2 23 23 H 1.09009 * 109.47235 * 60.00038 * 10 9 7 24 24 H 1.09000 * 109.47296 * 300.00002 * 10 9 7 25 25 H 1.08992 * 109.47221 * 59.99968 * 11 10 9 26 26 H 1.09000 * 109.46881 * 300.00020 * 11 10 9 27 27 H 1.09003 * 109.47499 * 60.00168 * 12 11 10 28 28 H 1.09000 * 109.47296 * 299.99767 * 12 11 10 29 29 H 1.00896 * 110.99509 * 56.04635 * 13 12 11 30 30 H 1.09005 * 109.47104 * 60.00363 * 14 13 12 31 31 H 1.09000 * 109.47278 * 300.00384 * 14 13 12 32 32 H 1.08002 * 126.57514 * 359.97438 * 16 15 14 33 33 H 1.07998 * 125.78467 * 179.77218 * 17 16 15 34 34 H 1.08000 * 125.78555 * 179.79179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 7 1.7397 -7.4223 -0.0005 14 6 2.6641 -8.5639 -0.0005 15 6 1.8759 -9.8484 -0.0012 16 6 1.4358 -10.5663 -1.1369 17 6 0.7684 -11.6425 -0.6830 18 8 0.7880 -11.6189 0.6597 19 6 1.4557 -10.5315 1.0787 20 1 -0.4849 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8896 23 1 2.8718 -3.6045 0.8895 24 1 2.8718 -3.6045 -0.8905 25 1 0.8537 -5.0446 -0.8913 26 1 0.8531 -5.0451 0.8886 27 1 3.1002 -6.0925 0.8899 28 1 3.1015 -6.0924 -0.8901 29 1 1.1036 -7.4725 -0.7821 30 1 3.2920 -8.5230 0.8895 31 1 3.2921 -8.5229 -0.8905 32 1 1.5995 -10.2992 -2.1704 33 1 0.2987 -12.3985 -1.2947 34 1 1.6264 -10.2531 2.1081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385322040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = -9.164441 kcal Electronic energy + Delta-G solvation = -14085.352197 eV Core-core repulsion = 11598.008547 eV Total energy + Delta-G solvation = -2487.343650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.67908 -36.92342 -34.57781 -33.09951 -31.82063 -29.94953 -28.24827 -25.54279 -23.62525 -21.75693 -21.37983 -20.53442 -19.90212 -17.61941 -16.20168 -16.11378 -15.81778 -14.93601 -14.56341 -14.33870 -14.21057 -13.76737 -12.97995 -12.80240 -12.39268 -12.12737 -11.81878 -11.50627 -11.35943 -10.96086 -10.52970 -10.51735 -10.40055 -9.93223 -9.59965 -9.23529 -8.99720 -8.71467 -8.35733 -8.29943 -5.95511 -3.97787 1.62127 2.40580 2.99412 3.35617 3.39739 3.42340 4.37407 4.50159 4.66052 4.70074 4.95506 5.26872 5.38267 5.40063 5.53044 5.56124 5.56872 5.89275 5.93191 6.00632 6.17997 6.26475 6.31873 6.54084 6.85421 6.95076 6.99206 7.06495 7.25615 7.43316 7.73388 7.89781 8.05772 8.48433 9.09614 9.65826 11.15866 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.087732 B = 0.003329 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.077077 B = 8407.731813 C = 8512.595503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.059 3.941 13 N -0.687 5.687 14 C 0.126 3.874 15 C -0.179 4.179 16 C -0.209 4.209 17 C -0.047 4.047 18 O -0.180 6.180 19 C -0.021 4.021 20 H 0.260 0.740 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.341 0.659 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.145 0.855 33 H 0.200 0.800 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -21.620 -0.953 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.070 4.070 13 N -0.318 5.318 14 C -0.003 4.003 15 C -0.181 4.181 16 C -0.228 4.228 17 C -0.114 4.114 18 O -0.076 6.076 19 C -0.090 4.090 20 H 0.070 0.930 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.159 0.841 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.163 0.837 33 H 0.217 0.783 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.116 -21.713 -0.083 21.936 hybrid contribution 0.816 1.141 -1.149 1.813 sum 3.931 -20.572 -1.232 20.980 Atomic orbital electron populations 1.69961 1.06048 1.26624 1.50950 1.25039 0.94851 0.99223 0.95430 0.86665 0.79582 0.83206 0.78578 1.20295 1.21299 1.20255 1.21264 0.92983 0.91248 1.50443 0.92822 1.19088 0.94032 0.91321 0.97160 1.21594 0.99084 0.93960 1.00073 1.21635 0.97878 0.93804 1.02022 1.22099 0.96270 0.88477 1.00158 1.60575 1.19715 1.01300 1.50255 1.20212 0.92813 0.86230 1.01011 1.20402 1.05666 0.99238 0.92750 1.21775 1.04032 0.97063 0.99928 1.23964 1.04709 1.01786 0.80945 1.84071 1.59795 1.40974 1.22712 1.23921 0.98199 0.86891 0.99968 0.92994 0.96737 0.96601 0.93422 0.93687 0.92760 0.91639 0.91210 0.95542 0.84135 0.90348 0.94529 0.83707 0.78317 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.16 16 12 C 0.06 0.84 5.68 -3.82 -0.02 0.82 16 13 N -0.69 -8.97 6.49 -115.06 -0.75 -9.72 16 14 C 0.13 1.40 6.20 -4.98 -0.03 1.37 16 15 C -0.18 -1.94 5.68 -104.74 -0.59 -2.54 16 16 C -0.21 -2.05 10.87 -39.70 -0.43 -2.48 16 17 C -0.05 -0.41 12.09 29.42 0.36 -0.05 16 18 O -0.18 -1.88 10.65 5.70 0.06 -1.82 16 19 C -0.02 -0.22 12.01 29.42 0.35 0.14 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.34 4.36 8.72 -39.29 -0.34 4.02 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 294.35 15.07 4.44 4.44 Total: -1.00 -31.80 294.35 -7.12 -38.91 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.38 Total: -1.16 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.20 Total: -20.84 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.01 Total: -36.52 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: 0.06 Total: -1.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.80 -7.12 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385322040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.750 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds