Wall clock time and date at job start Mon Mar 30 2020 03:10:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86793 * 120.00334 * 2 1
4 4 H 1.48499 * 109.47173 * 240.00026 * 3 2 1
5 5 H 1.48503 * 109.46999 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.47337 * 119.99864 * 3 2 1
7 7 C 1.37885 * 119.99621 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99857 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.46889 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47048 * 180.02562 * 10 9 7
12 12 C 1.52997 * 109.47048 * 180.02562 * 11 10 9
13 13 N 1.46901 * 109.47346 * 179.97438 * 12 11 10
14 14 C 1.46897 * 111.00204 * 179.97438 * 13 12 11
15 15 C 1.50700 * 109.46862 * 180.02562 * 14 13 12
16 16 C 1.41385 * 126.58187 * 90.00668 * 15 14 13
17 17 C 1.34512 * 106.83926 * 180.25995 * 16 15 14
18 18 O 1.34305 * 108.42433 * 359.63135 * 17 16 15
19 19 C 1.34305 * 109.47225 * 0.37505 * 18 17 16
20 20 H 0.96995 * 119.99529 * 0.02562 * 1 2 3
21 21 H 1.08999 * 109.46826 * 60.00788 * 9 7 2
22 22 H 1.09000 * 109.47154 * 300.00468 * 9 7 2
23 23 H 1.09009 * 109.47235 * 60.00038 * 10 9 7
24 24 H 1.09000 * 109.47296 * 300.00002 * 10 9 7
25 25 H 1.08992 * 109.47221 * 59.99968 * 11 10 9
26 26 H 1.09000 * 109.46881 * 300.00020 * 11 10 9
27 27 H 1.09003 * 109.47499 * 60.00168 * 12 11 10
28 28 H 1.09000 * 109.47296 * 299.99767 * 12 11 10
29 29 H 1.00896 * 110.99509 * 56.04635 * 13 12 11
30 30 H 1.09005 * 109.47104 * 60.00363 * 14 13 12
31 31 H 1.09000 * 109.47278 * 300.00384 * 14 13 12
32 32 H 1.08002 * 126.57514 * 359.97438 * 16 15 14
33 33 H 1.07998 * 125.78467 * 179.77218 * 17 16 15
34 34 H 1.08000 * 125.78555 * 179.79179 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0045 -1.1942 -0.0005
8 1 3.0845 -1.1942 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 6 2.2451 -3.6622 -0.0005
11 6 1.4800 -4.9871 -0.0012
12 6 2.4742 -6.1501 -0.0005
13 7 1.7397 -7.4223 -0.0005
14 6 2.6641 -8.5639 -0.0005
15 6 1.8759 -9.8484 -0.0012
16 6 1.4358 -10.5663 -1.1369
17 6 0.7684 -11.6425 -0.6830
18 8 0.7880 -11.6189 0.6597
19 6 1.4557 -10.5315 1.0787
20 1 -0.4849 0.8400 -0.0004
21 1 0.6240 -2.5567 -0.8904
22 1 0.6245 -2.5571 0.8896
23 1 2.8718 -3.6045 0.8895
24 1 2.8718 -3.6045 -0.8905
25 1 0.8537 -5.0446 -0.8913
26 1 0.8531 -5.0451 0.8886
27 1 3.1002 -6.0925 0.8899
28 1 3.1015 -6.0924 -0.8901
29 1 1.1036 -7.4725 -0.7821
30 1 3.2920 -8.5230 0.8895
31 1 3.2921 -8.5229 -0.8905
32 1 1.5995 -10.2992 -2.1704
33 1 0.2987 -12.3985 -1.2947
34 1 1.6264 -10.2531 2.1081
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385322040.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:09
Heat of formation + Delta-G solvation = -9.164441 kcal
Electronic energy + Delta-G solvation = -14085.352197 eV
Core-core repulsion = 11598.008547 eV
Total energy + Delta-G solvation = -2487.343650 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.131 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-42.67908 -36.92342 -34.57781 -33.09951 -31.82063 -29.94953 -28.24827 -25.54279
-23.62525 -21.75693 -21.37983 -20.53442 -19.90212 -17.61941 -16.20168 -16.11378
-15.81778 -14.93601 -14.56341 -14.33870 -14.21057 -13.76737 -12.97995 -12.80240
-12.39268 -12.12737 -11.81878 -11.50627 -11.35943 -10.96086 -10.52970 -10.51735
-10.40055 -9.93223 -9.59965 -9.23529 -8.99720 -8.71467 -8.35733 -8.29943
-5.95511 -3.97787 1.62127 2.40580 2.99412 3.35617 3.39739 3.42340
4.37407 4.50159 4.66052 4.70074 4.95506 5.26872 5.38267 5.40063
5.53044 5.56124 5.56872 5.89275 5.93191 6.00632 6.17997 6.26475
6.31873 6.54084 6.85421 6.95076 6.99206 7.06495 7.25615 7.43316
7.73388 7.89781 8.05772 8.48433 9.09614 9.65826 11.15866
Molecular weight = 223.13amu
Principal moments of inertia in cm(-1)
A = 0.087732 B = 0.003329 C = 0.003288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 319.077077 B = 8407.731813 C = 8512.595503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.521 4.521
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.109 4.109
11 C -0.115 4.115
12 C 0.059 3.941
13 N -0.687 5.687
14 C 0.126 3.874
15 C -0.179 4.179
16 C -0.209 4.209
17 C -0.047 4.047
18 O -0.180 6.180
19 C -0.021 4.021
20 H 0.260 0.740
21 H 0.014 0.986
22 H 0.016 0.984
23 H 0.047 0.953
24 H 0.044 0.956
25 H 0.054 0.946
26 H 0.065 0.935
27 H 0.069 0.931
28 H 0.026 0.974
29 H 0.341 0.659
30 H 0.078 0.922
31 H 0.037 0.963
32 H 0.145 0.855
33 H 0.200 0.800
34 H 0.203 0.797
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.472 -21.620 -0.953 21.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.559 4.559
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.147 4.147
11 C -0.153 4.153
12 C -0.070 4.070
13 N -0.318 5.318
14 C -0.003 4.003
15 C -0.181 4.181
16 C -0.228 4.228
17 C -0.114 4.114
18 O -0.076 6.076
19 C -0.090 4.090
20 H 0.070 0.930
21 H 0.033 0.967
22 H 0.034 0.966
23 H 0.066 0.934
24 H 0.063 0.937
25 H 0.072 0.928
26 H 0.084 0.916
27 H 0.088 0.912
28 H 0.045 0.955
29 H 0.159 0.841
30 H 0.097 0.903
31 H 0.055 0.945
32 H 0.163 0.837
33 H 0.217 0.783
34 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges 3.116 -21.713 -0.083 21.936
hybrid contribution 0.816 1.141 -1.149 1.813
sum 3.931 -20.572 -1.232 20.980
Atomic orbital electron populations
1.69961 1.06048 1.26624 1.50950 1.25039 0.94851 0.99223 0.95430
0.86665 0.79582 0.83206 0.78578 1.20295 1.21299 1.20255 1.21264
0.92983 0.91248 1.50443 0.92822 1.19088 0.94032 0.91321 0.97160
1.21594 0.99084 0.93960 1.00073 1.21635 0.97878 0.93804 1.02022
1.22099 0.96270 0.88477 1.00158 1.60575 1.19715 1.01300 1.50255
1.20212 0.92813 0.86230 1.01011 1.20402 1.05666 0.99238 0.92750
1.21775 1.04032 0.97063 0.99928 1.23964 1.04709 1.01786 0.80945
1.84071 1.59795 1.40974 1.22712 1.23921 0.98199 0.86891 0.99968
0.92994 0.96737 0.96601 0.93422 0.93687 0.92760 0.91639 0.91210
0.95542 0.84135 0.90348 0.94529 0.83707 0.78317 0.78048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16
9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16
11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.16 16
12 C 0.06 0.84 5.68 -3.82 -0.02 0.82 16
13 N -0.69 -8.97 6.49 -115.06 -0.75 -9.72 16
14 C 0.13 1.40 6.20 -4.98 -0.03 1.37 16
15 C -0.18 -1.94 5.68 -104.74 -0.59 -2.54 16
16 C -0.21 -2.05 10.87 -39.70 -0.43 -2.48 16
17 C -0.05 -0.41 12.09 29.42 0.36 -0.05 16
18 O -0.18 -1.88 10.65 5.70 0.06 -1.82 16
19 C -0.02 -0.22 12.01 29.42 0.35 0.14 16
20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16
24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.34 4.36 8.72 -39.29 -0.34 4.02 16
30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16
33 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16
34 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16
LS Contribution 294.35 15.07 4.44 4.44
Total: -1.00 -31.80 294.35 -7.12 -38.91
By element:
Atomic # 1 Polarization: 4.22 SS G_CDS: -5.38 Total: -1.16 kcal
Atomic # 6 Polarization: -19.64 SS G_CDS: -1.20 Total: -20.84 kcal
Atomic # 7 Polarization: -36.51 SS G_CDS: -0.01 Total: -36.52 kcal
Atomic # 8 Polarization: -1.88 SS G_CDS: 0.06 Total: -1.82 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -31.80 -7.12 -38.91 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385322040.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.750 kcal
(2) G-P(sol) polarization free energy of solvation -31.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds