Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00334 * 2 1 4 4 H 1.48499 * 109.47173 * 240.00026 * 3 2 1 5 5 H 1.48503 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47337 * 119.99864 * 3 2 1 7 7 C 1.37885 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47048 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47048 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47346 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00204 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46862 * 180.02562 * 14 13 12 16 16 C 1.41385 * 126.58187 * 90.00668 * 15 14 13 17 17 C 1.34512 * 106.83926 * 180.25995 * 16 15 14 18 18 O 1.34305 * 108.42433 * 359.63135 * 17 16 15 19 19 C 1.34305 * 109.47225 * 0.37505 * 18 17 16 20 20 H 0.96995 * 119.99529 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46826 * 60.00788 * 9 7 2 22 22 H 1.09000 * 109.47154 * 300.00468 * 9 7 2 23 23 H 1.09009 * 109.47235 * 60.00038 * 10 9 7 24 24 H 1.09000 * 109.47296 * 300.00002 * 10 9 7 25 25 H 1.08992 * 109.47221 * 59.99968 * 11 10 9 26 26 H 1.09000 * 109.46881 * 300.00020 * 11 10 9 27 27 H 1.09003 * 109.47499 * 60.00168 * 12 11 10 28 28 H 1.09000 * 109.47296 * 299.99767 * 12 11 10 29 29 H 1.00896 * 110.99509 * 56.04635 * 13 12 11 30 30 H 1.09005 * 109.47104 * 60.00363 * 14 13 12 31 31 H 1.09000 * 109.47278 * 300.00384 * 14 13 12 32 32 H 1.08002 * 126.57514 * 359.97438 * 16 15 14 33 33 H 1.07998 * 125.78467 * 179.77218 * 17 16 15 34 34 H 1.08000 * 125.78555 * 179.79179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 7 1.7397 -7.4223 -0.0005 14 6 2.6641 -8.5639 -0.0005 15 6 1.8759 -9.8484 -0.0012 16 6 1.4358 -10.5663 -1.1369 17 6 0.7684 -11.6425 -0.6830 18 8 0.7880 -11.6189 0.6597 19 6 1.4557 -10.5315 1.0787 20 1 -0.4849 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8896 23 1 2.8718 -3.6045 0.8895 24 1 2.8718 -3.6045 -0.8905 25 1 0.8537 -5.0446 -0.8913 26 1 0.8531 -5.0451 0.8886 27 1 3.1002 -6.0925 0.8899 28 1 3.1015 -6.0924 -0.8901 29 1 1.1036 -7.4725 -0.7821 30 1 3.2920 -8.5230 0.8895 31 1 3.2921 -8.5229 -0.8905 32 1 1.5995 -10.2992 -2.1704 33 1 0.2987 -12.3985 -1.2947 34 1 1.6264 -10.2531 2.1081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385322040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = -29.605063 kcal Electronic energy + Delta-G solvation = -14086.238568 eV Core-core repulsion = 11598.008547 eV Total energy + Delta-G solvation = -2488.230022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.40534 -38.07096 -36.16199 -34.60668 -33.30999 -30.92331 -29.72136 -26.99211 -25.13283 -22.86791 -22.42734 -21.86651 -21.11418 -18.51695 -18.27302 -16.98268 -16.86510 -16.52852 -15.91052 -15.52127 -15.35992 -14.81053 -14.33502 -14.05475 -13.69082 -13.65518 -13.21745 -12.89614 -12.80004 -12.56325 -12.30353 -12.14650 -12.08486 -11.36923 -11.31240 -11.05821 -10.65671 -10.54704 -9.47684 -9.33540 -8.19544 -6.31315 0.90509 1.39725 1.43352 1.51326 1.65212 2.33849 2.41357 3.13009 3.37052 3.89105 4.00782 4.12992 4.20156 4.26222 4.54252 4.58851 4.63412 4.71898 4.82480 4.84726 4.93149 5.15786 5.24389 5.27920 5.32572 5.36030 5.55290 5.59177 5.78333 5.87143 6.06514 6.23836 6.25961 6.41421 6.86315 7.38005 8.92271 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.087732 B = 0.003329 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.077077 B = 8407.731813 C = 8512.595503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.070 3.930 13 N -0.693 5.693 14 C 0.130 3.870 15 C -0.198 4.198 16 C -0.228 4.228 17 C -0.043 4.043 18 O -0.192 6.192 19 C -0.030 4.030 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.011 1.011 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.342 0.658 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.155 0.845 33 H 0.234 0.766 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -22.157 -1.134 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.325 5.325 14 C 0.002 3.998 15 C -0.199 4.199 16 C -0.247 4.247 17 C -0.110 4.110 18 O -0.087 6.087 19 C -0.098 4.098 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.159 0.841 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.173 0.827 33 H 0.250 0.750 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.326 -22.271 -0.265 22.688 hybrid contribution 0.391 1.260 -1.104 1.720 sum 4.717 -21.011 -1.370 21.577 Atomic orbital electron populations 1.70104 1.07897 1.27855 1.51690 1.26043 0.95810 1.03540 0.94709 0.85472 0.78253 0.77902 0.79252 1.19077 1.20794 1.19069 1.21737 0.93615 0.92533 1.50576 0.92097 1.19024 0.94537 0.93345 0.94572 1.21402 0.97971 0.93574 1.00557 1.21462 0.98076 0.93445 1.01389 1.21874 0.95270 0.87880 1.00809 1.60533 1.20160 1.01308 1.50468 1.20199 0.92540 0.85577 1.01515 1.20525 1.06408 0.99429 0.93561 1.22029 1.04733 0.97608 1.00348 1.24656 1.03754 1.02054 0.80508 1.84082 1.59896 1.41122 1.23629 1.24323 0.97919 0.86755 1.00806 0.92759 0.99282 0.99303 0.92910 0.93044 0.93034 0.92712 0.90675 0.94757 0.84070 0.89715 0.94078 0.82690 0.74984 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.34 13.29 21.45 0.28 -58.05 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C -0.11 -3.66 5.47 30.59 0.17 -3.49 16 12 C 0.07 1.92 5.68 86.30 0.49 2.41 16 13 N -0.69 -17.20 6.49 -517.93 -3.36 -20.56 16 14 C 0.13 2.70 6.20 85.56 0.53 3.23 16 15 C -0.20 -4.04 5.68 -19.94 -0.11 -4.15 16 16 C -0.23 -4.15 10.87 22.19 0.24 -3.91 16 17 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 18 O -0.19 -3.73 10.65 -2.52 -0.03 -3.75 16 19 C -0.03 -0.57 12.01 66.97 0.80 0.24 16 20 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 22 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.34 8.38 8.72 -89.70 -0.78 7.60 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -67.97 294.35 3.13 -64.84 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.28 Total: 10.16 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 3.93 Total: -39.57 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.08 Total: -78.62 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.03 Total: -3.75 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.97 3.13 -64.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385322040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.234 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds