Wall clock time and date at job start Mon Mar 30 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47112 * 269.99729 * 3 2 1 5 5 H 1.48502 * 109.47194 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47224 * 149.99834 * 3 2 1 7 7 C 1.37878 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47630 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47294 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46946 * 180.02562 * 11 10 9 13 13 N 1.46505 * 109.46895 * 180.02562 * 12 11 10 14 14 C 1.36349 * 125.63298 * 265.25948 * 13 12 11 15 15 C 1.34847 * 108.21761 * 180.14942 * 14 13 12 16 16 C 1.40896 * 107.41771 * 359.63274 * 15 14 13 17 17 C 1.34849 * 107.41486 * 0.22942 * 16 15 14 18 18 C 1.50698 * 125.88991 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47398 * 359.97438 * 18 17 16 20 20 H 0.97002 * 120.00268 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46743 * 59.99983 * 9 7 2 22 22 H 1.08999 * 109.46647 * 300.00411 * 9 7 2 23 23 H 1.09004 * 109.46822 * 59.99734 * 10 9 7 24 24 H 1.09002 * 109.47241 * 300.00689 * 10 9 7 25 25 H 1.08991 * 109.47474 * 60.00295 * 11 10 9 26 26 H 1.09001 * 109.47046 * 299.99692 * 11 10 9 27 27 H 1.08998 * 109.47603 * 60.00070 * 12 11 10 28 28 H 1.08999 * 109.47500 * 299.99536 * 12 11 10 29 29 H 1.07999 * 125.89168 * 0.03422 * 14 13 12 30 30 H 1.08002 * 126.29438 * 179.90446 * 15 14 13 31 31 H 1.07997 * 126.29283 * 180.25032 * 16 15 14 32 32 H 1.09001 * 109.47224 * 119.97530 * 18 17 16 33 33 H 1.09001 * 109.47375 * 239.97958 * 18 17 16 34 34 H 0.96692 * 114.00319 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7418 -7.4187 -0.0007 14 6 1.4228 -8.1529 1.1031 15 6 0.7539 -9.2520 0.6995 16 6 0.6489 -9.1901 -0.7042 17 6 1.2621 -8.0580 -1.1052 18 6 1.3940 -7.5814 -2.5288 19 8 0.7651 -8.5188 -3.4052 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6240 -2.5566 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8894 25 1 0.8538 -5.0446 -0.8903 26 1 0.8532 -5.0451 0.8897 27 1 3.1004 -6.0924 0.8909 28 1 3.1017 -6.0923 -0.8890 29 1 1.6657 -7.8989 2.1243 30 1 0.3657 -10.0336 1.3357 31 1 0.1658 -9.9157 -1.3417 32 1 0.9135 -6.6085 -2.6322 33 1 2.4495 -7.4946 -2.7867 34 1 0.8111 -8.2754 -4.3398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385782016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:14 Heat of formation + Delta-G solvation = -23.352378 kcal Electronic energy + Delta-G solvation = -14665.576005 eV Core-core repulsion = 12177.617121 eV Total energy + Delta-G solvation = -2487.958885 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11711 -36.78504 -35.48655 -33.13310 -31.34192 -30.04938 -28.13670 -25.22868 -24.88568 -22.20231 -20.49778 -20.23736 -18.88233 -17.32841 -16.73301 -16.31371 -15.30035 -15.05021 -14.51746 -14.03571 -13.86160 -13.40502 -13.04411 -12.56670 -12.32786 -11.94738 -11.84760 -11.70420 -11.31011 -11.08271 -10.74147 -10.66251 -10.57160 -10.33979 -9.79290 -9.45728 -9.15196 -8.39867 -8.37518 -7.84278 -6.04370 -4.07565 2.37226 2.97924 3.20146 3.28291 3.34851 3.37768 4.19820 4.41849 4.83293 5.00305 5.16349 5.21340 5.29271 5.31350 5.38545 5.45289 5.67125 5.79172 5.90729 6.02804 6.27821 6.42747 6.53137 6.58986 6.74968 7.01556 7.16896 7.34437 7.51220 7.58008 7.61506 7.74498 7.94812 8.36546 8.99625 9.56954 11.06917 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043028 B = 0.004715 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.577486 B = 5936.810442 C = 6229.635431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.436 5.436 14 C -0.009 4.009 15 C -0.212 4.212 16 C -0.176 4.176 17 C 0.002 3.998 18 C 0.151 3.849 19 O -0.563 6.563 20 H 0.261 0.739 21 H 0.015 0.985 22 H 0.016 0.984 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -15.032 -2.605 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.171 4.171 12 C -0.022 4.022 13 N -0.112 5.112 14 C -0.139 4.139 15 C -0.236 4.236 16 C -0.201 4.201 17 C -0.110 4.110 18 C 0.073 3.927 19 O -0.367 6.367 20 H 0.071 0.929 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.809 -14.893 -2.046 15.508 hybrid contribution 0.508 1.332 -0.415 1.485 sum 4.318 -13.561 -2.461 14.443 Atomic orbital electron populations 1.69962 1.06095 1.26676 1.50680 1.25031 0.94842 0.99306 0.95264 0.86594 0.79839 0.83450 0.78120 1.20643 1.21174 1.19870 1.21247 0.93003 0.91084 1.50812 0.92693 1.19083 0.93943 0.91251 0.97290 1.21594 0.99178 0.93324 1.00487 1.22063 0.98097 0.94129 1.02793 1.22122 0.94869 0.81245 1.03929 1.44075 1.43357 1.18351 1.05455 1.21794 1.06085 0.94614 0.91426 1.20873 1.07456 1.00051 0.95244 1.20587 1.06139 0.98684 0.94673 1.19793 1.06359 0.96581 0.88244 1.20104 0.96162 0.91082 0.85380 1.86402 1.80445 1.49497 1.20397 0.92940 0.96653 0.96579 0.93081 0.93185 0.91902 0.91602 0.89206 0.89854 0.82195 0.84986 0.84776 0.92225 0.92897 0.76822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.08 5.15 -26.74 -0.14 -2.21 16 11 C -0.13 -2.15 5.54 -26.73 -0.15 -2.30 16 12 C 0.10 1.32 5.84 -4.04 -0.02 1.29 16 13 N -0.44 -6.23 2.75 -112.54 -0.31 -6.54 16 14 C -0.01 -0.12 11.43 -16.75 -0.19 -0.31 16 15 C -0.21 -2.95 10.86 -39.78 -0.43 -3.38 16 16 C -0.18 -2.65 10.18 -39.78 -0.40 -3.05 16 17 C 0.00 0.02 6.87 -81.79 -0.56 -0.54 16 18 C 0.15 1.85 7.08 36.00 0.25 2.10 16 19 O -0.56 -6.40 12.93 -35.23 -0.46 -6.86 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 28 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 29 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.13 1.93 7.84 -52.49 -0.41 1.52 16 32 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.38 2.38 9.12 45.56 0.42 2.79 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -32.42 292.18 -7.42 -39.84 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.58 Total: 0.31 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.19 Total: -21.43 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.43 Total: -32.67 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.46 Total: -6.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.42 -7.42 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds