Wall clock time and date at job start Mon Mar 30 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47112 * 269.99729 * 3 2 1 5 5 H 1.48502 * 109.47194 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47224 * 149.99834 * 3 2 1 7 7 C 1.37878 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47630 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47294 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46946 * 180.02562 * 11 10 9 13 13 N 1.46505 * 109.46895 * 180.02562 * 12 11 10 14 14 C 1.36349 * 125.63298 * 265.25948 * 13 12 11 15 15 C 1.34847 * 108.21761 * 180.14942 * 14 13 12 16 16 C 1.40896 * 107.41771 * 359.63274 * 15 14 13 17 17 C 1.34849 * 107.41486 * 0.22942 * 16 15 14 18 18 C 1.50698 * 125.88991 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47398 * 359.97438 * 18 17 16 20 20 H 0.97002 * 120.00268 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46743 * 59.99983 * 9 7 2 22 22 H 1.08999 * 109.46647 * 300.00411 * 9 7 2 23 23 H 1.09004 * 109.46822 * 59.99734 * 10 9 7 24 24 H 1.09002 * 109.47241 * 300.00689 * 10 9 7 25 25 H 1.08991 * 109.47474 * 60.00295 * 11 10 9 26 26 H 1.09001 * 109.47046 * 299.99692 * 11 10 9 27 27 H 1.08998 * 109.47603 * 60.00070 * 12 11 10 28 28 H 1.08999 * 109.47500 * 299.99536 * 12 11 10 29 29 H 1.07999 * 125.89168 * 0.03422 * 14 13 12 30 30 H 1.08002 * 126.29438 * 179.90446 * 15 14 13 31 31 H 1.07997 * 126.29283 * 180.25032 * 16 15 14 32 32 H 1.09001 * 109.47224 * 119.97530 * 18 17 16 33 33 H 1.09001 * 109.47375 * 239.97958 * 18 17 16 34 34 H 0.96692 * 114.00319 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7418 -7.4187 -0.0007 14 6 1.4228 -8.1529 1.1031 15 6 0.7539 -9.2520 0.6995 16 6 0.6489 -9.1901 -0.7042 17 6 1.2621 -8.0580 -1.1052 18 6 1.3940 -7.5814 -2.5288 19 8 0.7651 -8.5188 -3.4052 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6240 -2.5566 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8894 25 1 0.8538 -5.0446 -0.8903 26 1 0.8532 -5.0451 0.8897 27 1 3.1004 -6.0924 0.8909 28 1 3.1017 -6.0923 -0.8890 29 1 1.6657 -7.8989 2.1243 30 1 0.3657 -10.0336 1.3357 31 1 0.1658 -9.9157 -1.3417 32 1 0.9135 -6.6085 -2.6322 33 1 2.4495 -7.4946 -2.7867 34 1 0.8111 -8.2754 -4.3398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385782016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:13 Heat of formation + Delta-G solvation = -44.055085 kcal Electronic energy + Delta-G solvation = -14666.473742 eV Core-core repulsion = 12177.617121 eV Total energy + Delta-G solvation = -2488.856621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.16335 -37.66237 -36.98962 -34.96799 -32.92318 -31.04130 -29.75802 -26.58918 -26.18782 -23.80231 -21.89571 -21.52806 -19.94859 -18.46894 -18.23976 -17.72482 -16.52355 -16.40483 -16.29312 -15.11639 -14.92959 -14.61391 -14.38363 -14.22914 -13.68091 -13.52037 -13.19755 -13.01442 -12.82644 -12.38147 -12.36972 -12.21324 -12.20210 -11.49554 -11.39224 -11.20739 -11.15021 -10.57026 -9.49275 -8.89530 -8.21205 -6.32999 1.30110 1.40171 1.41289 1.52431 1.96264 2.12504 2.40385 3.12331 3.34506 3.78763 3.96315 4.06495 4.26253 4.30721 4.35007 4.38153 4.48928 4.62148 4.75618 4.77291 4.84290 5.03945 5.22547 5.24561 5.40065 5.46752 5.51688 5.72423 5.84504 6.12629 6.22518 6.31564 6.50316 6.85292 6.88946 7.37121 8.90734 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043028 B = 0.004715 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.577486 B = 5936.810442 C = 6229.635431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.121 4.121 12 C 0.107 3.893 13 N -0.441 5.441 14 C -0.016 4.016 15 C -0.223 4.223 16 C -0.200 4.200 17 C -0.015 4.015 18 C 0.153 3.847 19 O -0.577 6.577 20 H 0.263 0.737 21 H -0.013 1.013 22 H -0.013 1.013 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.185 0.815 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -14.994 -2.570 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.159 4.159 12 C -0.013 4.013 13 N -0.118 5.118 14 C -0.146 4.146 15 C -0.248 4.248 16 C -0.224 4.224 17 C -0.127 4.127 18 C 0.074 3.926 19 O -0.386 6.386 20 H 0.072 0.928 21 H 0.006 0.994 22 H 0.005 0.995 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.202 0.798 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.653 -14.871 -2.030 16.038 hybrid contribution -0.128 1.278 -0.443 1.359 sum 5.525 -13.593 -2.473 14.880 Atomic orbital electron populations 1.70106 1.07976 1.27780 1.51811 1.26018 0.95719 1.03541 0.94744 0.85437 0.78708 0.78332 0.78521 1.19732 1.20991 1.18467 1.21740 0.93716 0.92279 1.50355 0.91726 1.19027 0.94566 0.93490 0.94524 1.21362 0.97914 0.92311 1.01565 1.21849 0.98265 0.94114 1.01664 1.22054 0.93862 0.79496 1.05929 1.44166 1.43574 1.18511 1.05548 1.22284 1.05557 0.94376 0.92390 1.21183 1.07600 1.00861 0.95118 1.20782 1.06926 0.99281 0.95459 1.20267 1.06170 0.96701 0.89528 1.20115 0.97267 0.90746 0.84461 1.86358 1.80527 1.49640 1.22066 0.92824 0.99426 0.99492 0.91990 0.91935 0.93039 0.92879 0.87109 0.88047 0.79785 0.83331 0.85042 0.92584 0.90975 0.74388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.09 4.97 29.84 0.15 1.24 16 10 C -0.09 -3.49 5.15 30.59 0.16 -3.34 16 11 C -0.12 -3.80 5.54 30.59 0.17 -3.63 16 12 C 0.11 2.57 5.84 86.38 0.50 3.07 16 13 N -0.44 -11.82 2.75 -509.96 -1.40 -13.22 16 14 C -0.02 -0.41 11.43 83.21 0.95 0.54 16 15 C -0.22 -5.98 10.86 22.14 0.24 -5.74 16 16 C -0.20 -5.90 10.18 22.14 0.23 -5.67 16 17 C -0.02 -0.43 6.87 41.08 0.28 -0.15 16 18 C 0.15 3.53 7.08 71.24 0.50 4.03 16 19 O -0.58 -12.53 12.93 -148.98 -1.93 -14.46 16 20 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 21 H -0.01 -0.72 8.14 -2.38 -0.02 -0.73 16 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 1.72 7.92 -2.39 -0.02 1.71 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.11 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.10 2.09 7.92 -2.39 -0.02 2.07 16 29 H 0.19 3.61 8.06 -2.91 -0.02 3.58 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.13 3.81 7.84 -2.91 -0.02 3.78 16 32 H 0.06 1.32 7.92 -2.39 -0.02 1.30 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 4.46 9.12 -74.06 -0.68 3.78 16 Total: -1.00 -69.74 292.18 3.25 -66.49 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.39 Total: 11.85 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.88 Total: -39.42 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.12 Total: -70.09 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.93 Total: -14.46 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.74 3.25 -66.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds