Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86798 * 119.99711 * 2 1 4 4 H 1.48504 * 109.46846 * 239.99880 * 3 2 1 5 5 H 1.48503 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 120.00226 * 3 2 1 7 7 C 1.40048 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99515 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00251 * 0.02562 * 7 2 1 10 10 O 1.21694 * 120.00013 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00157 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99710 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46495 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.61730 * 55.35666 * 13 12 11 15 15 C 1.53299 * 109.61425 * 294.99531 * 13 12 11 16 16 C 1.52885 * 108.57897 * 165.82981 * 15 13 12 17 17 C 1.52706 * 110.15205 * 54.52160 * 16 15 13 18 18 H 1.08997 * 115.38680 * 128.79141 * 17 16 15 19 19 C 1.53652 * 115.15092 * 270.19411 * 17 16 15 20 20 C 1.52066 * 120.52309 * 338.52989 * 17 16 15 21 21 H 1.09007 * 115.93119 * 151.10593 * 20 17 16 22 22 C 1.52072 * 120.02237 * 6.39015 * 20 17 16 23 23 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 24 24 H 0.96992 * 119.99628 * 0.02562 * 11 9 7 25 25 H 1.08998 * 109.47204 * 60.00284 * 12 11 9 26 26 H 1.09000 * 109.47675 * 299.99685 * 12 11 9 27 27 H 1.08996 * 109.61674 * 46.10546 * 15 13 12 28 28 H 1.08997 * 109.62199 * 285.55509 * 15 13 12 29 29 H 1.09008 * 109.35620 * 294.31660 * 16 15 13 30 30 H 1.08992 * 109.35943 * 174.73604 * 16 15 13 31 31 H 1.09003 * 117.53814 * 4.68858 * 19 17 16 32 32 H 1.09000 * 117.53817 * 219.44860 * 19 17 16 33 33 H 1.08998 * 109.26612 * 98.56677 * 22 20 17 34 34 H 1.09003 * 109.26482 * 218.03264 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0071 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2753 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2110 -6.0793 0.0007 14 1 2.8918 -5.9781 0.8460 15 6 3.0102 -6.0739 -1.3074 16 6 4.2168 -6.9987 -1.1450 17 6 3.7598 -8.3868 -0.7021 18 1 4.1419 -9.2164 -1.2969 19 6 3.6767 -8.5928 0.8183 20 6 2.4103 -8.5770 -0.0275 21 1 1.9364 -9.5475 -0.1746 22 6 1.4425 -7.4089 0.0808 23 1 -0.4850 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0009 25 1 0.5904 -4.9739 -0.8903 26 1 0.5896 -4.9744 0.8897 27 1 3.3515 -5.0616 -1.5235 28 1 2.3812 -6.4327 -2.1221 29 1 4.8913 -6.5842 -0.3956 30 1 4.7421 -7.0777 -2.0966 31 1 3.8683 -7.7291 1.4551 32 1 4.0055 -9.5531 1.2155 33 1 0.7020 -7.4803 -0.7158 34 1 0.9370 -7.4491 1.0457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403493518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -39.653986 kcal Electronic energy + Delta-G solvation = -15187.502364 eV Core-core repulsion = 12698.836589 eV Total energy + Delta-G solvation = -2488.665776 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66898 -37.17234 -34.45870 -32.46877 -31.48753 -30.77078 -26.95629 -25.17387 -23.75725 -21.64541 -20.71113 -19.57060 -18.37823 -17.22135 -15.92257 -15.23732 -14.52774 -14.44994 -14.20290 -13.92336 -13.28943 -13.26527 -12.61914 -12.21777 -12.08008 -11.89167 -11.42163 -11.32795 -11.06789 -10.94857 -10.51032 -10.47711 -10.41147 -10.26857 -10.02983 -9.72477 -9.55250 -8.80672 -7.56273 -7.41414 -6.14182 -4.59704 3.18149 3.22770 3.24802 3.72659 4.13861 4.62804 4.64146 4.70255 4.81247 4.93272 5.10359 5.21737 5.38876 5.44870 5.58825 5.68370 5.70858 5.79734 5.84539 5.95479 6.03088 6.15227 6.18795 6.23628 6.28041 6.40091 6.50133 6.64896 6.77247 7.46968 7.98971 8.17449 8.37995 9.06501 9.60553 10.65163 10.84342 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054794 B = 0.005605 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.881513 B = 4994.445523 C = 5305.553248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.138 3.862 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.089 4.089 17 C -0.147 4.147 18 H 0.097 0.903 19 C -0.188 4.188 20 C -0.135 4.135 21 H 0.094 0.906 22 C -0.081 4.081 23 H 0.268 0.732 24 H 0.379 0.621 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 -13.700 -0.758 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.013 3.987 13 C -0.116 4.116 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.127 4.127 17 C -0.165 4.165 18 H 0.115 0.885 19 C -0.225 4.225 20 C -0.153 4.153 21 H 0.113 0.887 22 C -0.119 4.119 23 H 0.079 0.921 24 H 0.210 0.790 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.855 -13.598 -0.752 15.247 hybrid contribution 0.963 0.649 0.043 1.163 sum 7.818 -12.949 -0.709 15.143 Atomic orbital electron populations 1.70020 1.07048 1.27271 1.35486 1.25704 0.94596 1.00231 0.92645 0.86449 0.79816 0.81138 0.79398 1.19321 1.20581 1.19323 1.20859 0.93503 0.89524 1.54522 0.91568 1.18203 0.87198 0.82515 0.76310 1.90595 1.14139 1.86958 1.54862 1.46126 1.08446 1.04988 1.82682 1.20869 0.93686 0.83673 1.00459 1.21621 0.97457 0.94336 0.98221 0.90837 1.21649 0.96451 0.99697 0.97491 1.21074 0.97760 0.92810 1.01022 1.22237 1.00623 0.98781 0.94901 0.88466 1.23161 1.02782 1.02750 0.93841 1.21816 0.89833 0.99776 1.03916 0.88741 1.20989 0.96717 0.91971 1.02242 0.92117 0.78972 0.93473 0.93582 0.91039 0.91828 0.91736 0.91910 0.88602 0.89461 0.90984 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.49 11.83 55.55 0.66 -22.83 16 2 C 0.09 2.49 5.50 -17.36 -0.10 2.39 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 16.12 7.75 -12.99 -0.10 16.02 16 10 O -0.58 -19.34 15.02 5.19 0.08 -19.27 16 11 N -0.77 -17.43 5.14 -61.72 -0.32 -17.75 16 12 C 0.14 2.70 5.08 -4.04 -0.02 2.68 16 13 C -0.10 -1.41 2.02 -90.05 -0.18 -1.60 16 14 H 0.07 1.06 7.01 -51.93 -0.36 0.70 16 15 C -0.12 -1.56 5.20 -26.64 -0.14 -1.70 16 16 C -0.09 -1.01 5.81 -26.94 -0.16 -1.17 16 17 C -0.15 -1.57 6.24 -90.91 -0.57 -2.13 16 18 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 19 C -0.19 -1.96 9.60 -26.75 -0.26 -2.22 16 20 C -0.14 -1.48 6.01 -91.93 -0.55 -2.04 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.08 -1.02 5.25 -26.80 -0.14 -1.16 16 23 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 24 H 0.38 7.58 7.70 -40.82 -0.31 7.26 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 28 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 29 H 0.06 0.72 8.04 -51.92 -0.42 0.30 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.06 7.15 -51.93 -0.37 0.69 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -33.70 277.03 -8.16 -41.86 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.17 Total: 5.43 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.55 Total: -6.97 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.34 Total: -40.58 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.08 Total: -19.27 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.70 -8.16 -41.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403493518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.202 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds