Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86798 * 119.99711 * 2 1 4 4 H 1.48504 * 109.46846 * 239.99880 * 3 2 1 5 5 H 1.48503 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 120.00226 * 3 2 1 7 7 C 1.40048 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99515 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00251 * 0.02562 * 7 2 1 10 10 O 1.21694 * 120.00013 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00157 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99710 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46495 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.61730 * 55.35666 * 13 12 11 15 15 C 1.53299 * 109.61425 * 294.99531 * 13 12 11 16 16 C 1.52885 * 108.57897 * 165.82981 * 15 13 12 17 17 C 1.52706 * 110.15205 * 54.52160 * 16 15 13 18 18 H 1.08997 * 115.38680 * 128.79141 * 17 16 15 19 19 C 1.53652 * 115.15092 * 270.19411 * 17 16 15 20 20 C 1.52066 * 120.52309 * 338.52989 * 17 16 15 21 21 H 1.09007 * 115.93119 * 151.10593 * 20 17 16 22 22 C 1.52072 * 120.02237 * 6.39015 * 20 17 16 23 23 H 0.96996 * 119.99939 * 0.02562 * 1 2 3 24 24 H 0.96992 * 119.99628 * 0.02562 * 11 9 7 25 25 H 1.08998 * 109.47204 * 60.00284 * 12 11 9 26 26 H 1.09000 * 109.47675 * 299.99685 * 12 11 9 27 27 H 1.08996 * 109.61674 * 46.10546 * 15 13 12 28 28 H 1.08997 * 109.62199 * 285.55509 * 15 13 12 29 29 H 1.09008 * 109.35620 * 294.31660 * 16 15 13 30 30 H 1.08992 * 109.35943 * 174.73604 * 16 15 13 31 31 H 1.09003 * 117.53814 * 4.68858 * 19 17 16 32 32 H 1.09000 * 117.53817 * 219.44860 * 19 17 16 33 33 H 1.08998 * 109.26612 * 98.56677 * 22 20 17 34 34 H 1.09003 * 109.26482 * 218.03264 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0071 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2753 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2110 -6.0793 0.0007 14 1 2.8918 -5.9781 0.8460 15 6 3.0102 -6.0739 -1.3074 16 6 4.2168 -6.9987 -1.1450 17 6 3.7598 -8.3868 -0.7021 18 1 4.1419 -9.2164 -1.2969 19 6 3.6767 -8.5928 0.8183 20 6 2.4103 -8.5770 -0.0275 21 1 1.9364 -9.5475 -0.1746 22 6 1.4425 -7.4089 0.0808 23 1 -0.4850 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0009 25 1 0.5904 -4.9739 -0.8903 26 1 0.5896 -4.9744 0.8897 27 1 3.3515 -5.0616 -1.5235 28 1 2.3812 -6.4327 -2.1221 29 1 4.8913 -6.5842 -0.3956 30 1 4.7421 -7.0777 -2.0966 31 1 3.8683 -7.7291 1.4551 32 1 4.0055 -9.5531 1.2155 33 1 0.7020 -7.4803 -0.7158 34 1 0.9370 -7.4491 1.0457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403493518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -62.004816 kcal Electronic energy + Delta-G solvation = -15188.471569 eV Core-core repulsion = 12698.836589 eV Total energy + Delta-G solvation = -2489.634980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72768 -39.21056 -36.05303 -34.59614 -33.09614 -31.90172 -28.89929 -26.78447 -24.87786 -22.80613 -21.82270 -21.52248 -19.51865 -19.10596 -17.49063 -16.89230 -16.15606 -15.91329 -15.78070 -15.18294 -14.69526 -14.58050 -14.22853 -13.83326 -13.36418 -13.14590 -13.06377 -12.80874 -12.65273 -12.59839 -12.20276 -12.04440 -11.74525 -11.62879 -11.20910 -10.91728 -10.59139 -10.47942 -9.87724 -9.46384 -8.28894 -6.85973 1.40274 1.44128 1.55914 2.25359 2.47366 2.88396 3.14035 3.61135 3.71331 3.79640 3.85940 4.07804 4.18054 4.27545 4.40687 4.56075 4.60871 4.72316 4.79654 4.82539 4.98920 5.05097 5.06798 5.18881 5.25192 5.31412 5.33887 5.41054 5.44336 5.53230 5.87666 6.24174 6.28714 6.86425 7.55937 8.49498 8.67666 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054794 B = 0.005605 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.881513 B = 4994.445523 C = 5305.553248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.140 3.860 13 C -0.084 4.084 14 H 0.079 0.921 15 C -0.113 4.113 16 C -0.086 4.086 17 C -0.147 4.147 18 H 0.115 0.885 19 C -0.184 4.184 20 C -0.141 4.141 21 H 0.111 0.889 22 C -0.080 4.080 23 H 0.275 0.725 24 H 0.394 0.606 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -14.158 -0.843 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.407 5.407 12 C 0.015 3.985 13 C -0.102 4.102 14 H 0.097 0.903 15 C -0.151 4.151 16 C -0.123 4.123 17 C -0.165 4.165 18 H 0.133 0.867 19 C -0.221 4.221 20 C -0.159 4.159 21 H 0.129 0.871 22 C -0.118 4.118 23 H 0.084 0.916 24 H 0.228 0.772 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.285 -14.110 -0.837 16.911 hybrid contribution 0.191 0.735 0.069 0.763 sum 9.476 -13.375 -0.767 16.409 Atomic orbital electron populations 1.70197 1.09621 1.29017 1.36484 1.27013 0.95526 1.05050 0.91135 0.85045 0.78171 0.74567 0.80324 1.17754 1.19888 1.17771 1.21420 0.94747 0.90128 1.54866 0.89395 1.18660 0.86851 0.84523 0.76092 1.90546 1.16337 1.88093 1.57371 1.45801 1.09191 1.04722 1.80964 1.20972 0.94611 0.84215 0.98656 1.21501 0.96414 0.93100 0.99206 0.90304 1.21611 0.97348 0.99610 0.96546 1.21048 0.96553 0.92688 1.01998 1.22313 1.00099 0.98758 0.95334 0.86683 1.23214 1.01941 1.03339 0.93637 1.21798 0.89794 0.99465 1.04884 0.87128 1.20950 0.97070 0.91541 1.02216 0.91564 0.77195 0.95304 0.95420 0.92582 0.92085 0.91455 0.90516 0.89431 0.87749 0.91158 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.52 11.83 21.84 0.26 -51.26 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 41.39 29.56 68.60 2.03 43.42 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.58 -33.30 9.54 24.83 0.24 -33.06 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.53 32.08 7.75 86.36 0.67 32.75 16 10 O -0.64 -44.17 15.02 -4.33 -0.07 -44.23 16 11 N -0.75 -34.97 5.14 -467.39 -2.40 -37.37 16 12 C 0.14 5.67 5.08 86.38 0.44 6.10 16 13 C -0.08 -2.39 2.02 -10.43 -0.02 -2.41 16 14 H 0.08 2.20 7.01 -2.39 -0.02 2.18 16 15 C -0.11 -2.96 5.20 30.66 0.16 -2.80 16 16 C -0.09 -1.73 5.81 30.46 0.18 -1.55 16 17 C -0.15 -2.68 6.24 -10.98 -0.07 -2.75 16 18 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 19 C -0.18 -3.32 9.60 30.58 0.29 -3.03 16 20 C -0.14 -2.76 6.01 -11.64 -0.07 -2.83 16 21 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 22 C -0.08 -1.94 5.25 30.55 0.16 -1.78 16 23 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 24 H 0.39 15.78 7.70 -92.71 -0.71 15.06 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.62 6.99 -2.39 -0.02 1.61 16 28 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 29 H 0.07 1.34 8.04 -2.38 -0.02 1.32 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.74 7.15 -2.39 -0.02 1.72 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.03 277.03 2.64 -72.40 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.37 Total: 26.38 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 2.44 Total: -9.33 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.14 Total: -88.64 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.07 Total: -44.23 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -75.03 2.64 -72.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403493518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.392 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds