Wall clock time and date at job start Mon Mar 30 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46891 * 270.00048 * 3 2 1 5 5 H 1.48501 * 109.47458 * 29.99527 * 3 2 1 6 6 H 1.48497 * 109.47425 * 150.00013 * 3 2 1 7 7 C 1.37872 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00720 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99945 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47664 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00341 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00212 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00087 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.61742 * 60.35364 * 13 11 10 15 15 C 1.53310 * 109.61417 * 300.00000 * 13 11 10 16 16 C 1.52880 * 108.57828 * 165.64440 * 15 13 11 17 17 C 1.52710 * 110.15359 * 54.51937 * 16 15 13 18 18 H 1.09000 * 115.39168 * 128.78126 * 17 16 15 19 19 C 1.53651 * 115.14971 * 270.18954 * 17 16 15 20 20 C 1.52066 * 120.52463 * 338.52666 * 17 16 15 21 21 H 1.09003 * 115.93388 * 150.35859 * 20 17 16 22 22 C 1.52082 * 120.02002 * 6.39102 * 20 17 16 23 23 H 0.97002 * 120.00098 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46818 * 60.00088 * 9 7 2 25 25 H 1.09003 * 109.47325 * 300.00753 * 9 7 2 26 26 H 0.97002 * 119.99641 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.61807 * 45.91426 * 15 13 11 28 28 H 1.08997 * 109.61721 * 285.37079 * 15 13 11 29 29 H 1.08992 * 109.35928 * 294.31030 * 16 15 13 30 30 H 1.08999 * 109.24161 * 174.65257 * 16 15 13 31 31 H 1.08998 * 117.53718 * 4.69233 * 19 17 16 32 32 H 1.09002 * 117.53700 * 219.44749 * 19 17 16 33 33 H 1.09001 * 109.26787 * 98.56137 * 22 20 17 34 34 H 1.08998 * 109.26462 * 218.03055 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 1.7540 -4.8833 0.0033 12 8 0.5616 -5.1050 0.0035 13 6 2.7333 -6.0287 0.0049 14 1 3.3565 -5.9762 0.8977 15 6 3.6175 -5.9516 -1.2451 16 6 4.8148 -6.8827 -1.0531 17 6 4.3357 -8.2933 -0.7172 18 1 4.7600 -9.0891 -1.3294 19 6 4.1531 -8.5815 0.7809 20 6 2.9454 -8.5210 -0.1450 21 1 2.4815 -9.4775 -0.3860 22 6 1.9672 -7.3614 -0.0381 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 3.1569 -3.4353 0.0022 27 1 3.9678 -4.9287 -1.3831 28 1 3.0455 -6.2662 -2.1179 29 1 5.4363 -6.5090 -0.2395 30 1 5.4002 -6.9093 -1.9721 31 1 4.2982 -7.7534 1.4747 32 1 4.4592 -9.5616 1.1466 33 1 1.2815 -7.3901 -0.8849 34 1 1.3991 -7.4543 0.8874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403537906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:35 Heat of formation + Delta-G solvation = -40.183154 kcal Electronic energy + Delta-G solvation = -15182.527034 eV Core-core repulsion = 12693.838312 eV Total energy + Delta-G solvation = -2488.688722 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03185 -38.09272 -34.18219 -33.13191 -32.13515 -30.69457 -27.43540 -24.99203 -23.22760 -22.28100 -21.21142 -19.59176 -18.39762 -17.40139 -16.05845 -15.33512 -15.00844 -14.66033 -14.33113 -14.01373 -13.62675 -13.47458 -12.84107 -12.42941 -12.10383 -11.95821 -11.70427 -11.44529 -11.12141 -10.96259 -10.93017 -10.81206 -10.47937 -10.29820 -9.79336 -9.63543 -9.38051 -8.89225 -8.72027 -7.84392 -6.15627 -4.22540 3.24629 3.30728 3.33186 3.41347 3.69177 4.11735 4.38083 4.58534 4.71767 4.85483 4.99977 5.15152 5.19890 5.21292 5.40385 5.51597 5.56115 5.64814 5.73826 5.90011 5.95720 6.08519 6.10934 6.21905 6.25567 6.39761 6.44798 7.33267 7.47717 7.53860 7.68427 7.98708 8.66482 8.80029 9.14663 9.44385 10.94628 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051704 B = 0.005630 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.418658 B = 4972.429812 C = 5335.229651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.712 5.712 11 C 0.502 3.498 12 O -0.558 6.558 13 C -0.110 4.110 14 H 0.092 0.908 15 C -0.112 4.112 16 C -0.088 4.088 17 C -0.150 4.150 18 H 0.100 0.900 19 C -0.188 4.188 20 C -0.135 4.135 21 H 0.098 0.902 22 C -0.067 4.067 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.390 0.610 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -13.987 -0.871 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.360 5.360 11 C 0.286 3.714 12 O -0.437 6.437 13 C -0.131 4.131 14 H 0.110 0.890 15 C -0.149 4.149 16 C -0.125 4.125 17 C -0.168 4.168 18 H 0.118 0.882 19 C -0.224 4.224 20 C -0.154 4.154 21 H 0.116 0.884 22 C -0.105 4.105 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.222 0.778 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.134 -13.980 -0.859 16.721 hybrid contribution 0.890 0.987 0.056 1.331 sum 10.025 -12.992 -0.802 16.430 Atomic orbital electron populations 1.69978 1.06117 1.27271 1.48966 1.24952 0.94904 0.99440 0.94717 0.86420 0.79621 0.82676 0.78217 1.20458 1.21006 1.19759 1.21229 0.93237 0.90498 1.53130 0.91943 1.19097 0.88372 0.82065 0.97675 1.46466 1.11009 1.06221 1.72329 1.20442 0.89315 0.84389 0.77211 1.90644 1.17019 1.84990 1.51042 1.21568 0.97043 0.94464 1.00024 0.88981 1.21602 0.96133 1.00017 0.97198 1.21068 0.97232 0.92516 1.01685 1.22254 0.99978 0.98427 0.96172 0.88221 1.23165 1.03473 1.02697 0.93105 1.21880 0.89805 1.00109 1.03557 0.88389 1.20784 0.96041 0.90190 1.03440 0.92463 0.95589 0.95622 0.77771 0.91022 0.91103 0.91478 0.91444 0.88652 0.89298 0.90366 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.71 -15.21 5.34 -61.47 -0.33 -15.54 16 11 C 0.50 10.18 7.16 -10.99 -0.08 10.10 16 12 O -0.56 -13.65 15.97 5.55 0.09 -13.57 16 13 C -0.11 -1.61 2.32 -91.21 -0.21 -1.82 16 14 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 15 C -0.11 -1.41 5.23 -26.63 -0.14 -1.55 16 16 C -0.09 -0.89 5.81 -26.94 -0.16 -1.05 16 17 C -0.15 -1.51 6.24 -90.91 -0.57 -2.07 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.19 -1.86 9.60 -26.75 -0.26 -2.12 16 20 C -0.14 -1.50 6.01 -91.92 -0.55 -2.05 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 22 C -0.07 -0.93 4.57 -26.79 -0.12 -1.05 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.39 7.16 7.67 -40.82 -0.31 6.85 16 27 H 0.07 0.91 7.26 -51.93 -0.38 0.54 16 28 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 29 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.98 7.14 -51.93 -0.37 0.61 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -31.36 278.61 -8.02 -39.38 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.17 Total: 3.63 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.53 Total: -8.45 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.41 Total: -41.10 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.36 -8.02 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403537906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.799 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds