Wall clock time and date at job start Mon Mar 30 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46891 * 270.00048 * 3 2 1 5 5 H 1.48501 * 109.47458 * 29.99527 * 3 2 1 6 6 H 1.48497 * 109.47425 * 150.00013 * 3 2 1 7 7 C 1.37872 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00720 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99945 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47664 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00341 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00212 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00087 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.61742 * 60.35364 * 13 11 10 15 15 C 1.53310 * 109.61417 * 300.00000 * 13 11 10 16 16 C 1.52880 * 108.57828 * 165.64440 * 15 13 11 17 17 C 1.52710 * 110.15359 * 54.51937 * 16 15 13 18 18 H 1.09000 * 115.39168 * 128.78126 * 17 16 15 19 19 C 1.53651 * 115.14971 * 270.18954 * 17 16 15 20 20 C 1.52066 * 120.52463 * 338.52666 * 17 16 15 21 21 H 1.09003 * 115.93388 * 150.35859 * 20 17 16 22 22 C 1.52082 * 120.02002 * 6.39102 * 20 17 16 23 23 H 0.97002 * 120.00098 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46818 * 60.00088 * 9 7 2 25 25 H 1.09003 * 109.47325 * 300.00753 * 9 7 2 26 26 H 0.97002 * 119.99641 * 359.97438 * 10 9 7 27 27 H 1.08997 * 109.61807 * 45.91426 * 15 13 11 28 28 H 1.08997 * 109.61721 * 285.37079 * 15 13 11 29 29 H 1.08992 * 109.35928 * 294.31030 * 16 15 13 30 30 H 1.08999 * 109.24161 * 174.65257 * 16 15 13 31 31 H 1.08998 * 117.53718 * 4.69233 * 19 17 16 32 32 H 1.09002 * 117.53700 * 219.44749 * 19 17 16 33 33 H 1.09001 * 109.26787 * 98.56137 * 22 20 17 34 34 H 1.08998 * 109.26462 * 218.03055 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 1.7540 -4.8833 0.0033 12 8 0.5616 -5.1050 0.0035 13 6 2.7333 -6.0287 0.0049 14 1 3.3565 -5.9762 0.8977 15 6 3.6175 -5.9516 -1.2451 16 6 4.8148 -6.8827 -1.0531 17 6 4.3357 -8.2933 -0.7172 18 1 4.7600 -9.0891 -1.3294 19 6 4.1531 -8.5815 0.7809 20 6 2.9454 -8.5210 -0.1450 21 1 2.4815 -9.4775 -0.3860 22 6 1.9672 -7.3614 -0.0381 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 3.1569 -3.4353 0.0022 27 1 3.9678 -4.9287 -1.3831 28 1 3.0455 -6.2662 -2.1179 29 1 5.4363 -6.5090 -0.2395 30 1 5.4002 -6.9093 -1.9721 31 1 4.2982 -7.7534 1.4747 32 1 4.4592 -9.5616 1.1466 33 1 1.2815 -7.3901 -0.8849 34 1 1.3991 -7.4543 0.8874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403537906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:35 Heat of formation + Delta-G solvation = -60.579466 kcal Electronic energy + Delta-G solvation = -15183.411484 eV Core-core repulsion = 12693.838312 eV Total energy + Delta-G solvation = -2489.573172 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30523 -39.49886 -36.18187 -34.58679 -33.84963 -31.70020 -29.44090 -26.32751 -24.60723 -23.84292 -22.15265 -21.22135 -19.42862 -19.05281 -17.76718 -17.05961 -16.58927 -16.22979 -15.71185 -15.25468 -14.83797 -14.73817 -14.34636 -14.00606 -13.87874 -13.36014 -13.02071 -12.94126 -12.71989 -12.45209 -12.25536 -12.06817 -11.89768 -11.53480 -11.43881 -10.81243 -10.67482 -10.60744 -10.46912 -9.83860 -8.29946 -6.47039 1.42874 1.45480 1.56778 1.74311 2.31665 2.57273 2.89960 3.04910 3.60934 3.80853 3.82667 4.03913 4.10660 4.18961 4.34607 4.48012 4.60649 4.68088 4.84934 4.97924 5.02400 5.09830 5.17011 5.21324 5.22845 5.31126 5.32564 5.38163 5.47241 5.48136 5.68340 5.83743 6.63912 6.89288 7.22402 7.47756 8.82425 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051704 B = 0.005630 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.418658 B = 4972.429812 C = 5335.229651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.265 3.735 10 N -0.706 5.706 11 C 0.496 3.504 12 O -0.605 6.605 13 C -0.096 4.096 14 H 0.115 0.885 15 C -0.109 4.109 16 C -0.083 4.083 17 C -0.145 4.145 18 H 0.119 0.881 19 C -0.179 4.179 20 C -0.149 4.149 21 H 0.109 0.891 22 C -0.065 4.065 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.014 1.014 26 H 0.407 0.593 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -14.344 -0.927 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.355 5.355 11 C 0.284 3.716 12 O -0.488 6.488 13 C -0.117 4.117 14 H 0.132 0.868 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.163 4.163 18 H 0.137 0.863 19 C -0.216 4.216 20 C -0.167 4.167 21 H 0.127 0.873 22 C -0.103 4.103 23 H 0.078 0.922 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.243 0.757 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.464 -14.368 -0.915 19.043 hybrid contribution -0.210 1.046 0.073 1.069 sum 12.254 -13.323 -0.842 18.121 Atomic orbital electron populations 1.70144 1.08350 1.28595 1.49972 1.26086 0.95768 1.03977 0.93775 0.85136 0.78482 0.76828 0.78641 1.19529 1.20958 1.17843 1.21609 0.94294 0.90517 1.52945 0.89780 1.18552 0.88776 0.84530 0.93956 1.46213 1.11093 1.05572 1.72609 1.21549 0.89734 0.85132 0.75163 1.90618 1.19675 1.85667 1.52793 1.21563 0.95968 0.91843 1.02290 0.86751 1.21614 0.96696 1.01009 0.95404 1.21083 0.95999 0.91780 1.03188 1.22372 0.98414 0.98899 0.96574 0.86334 1.23251 1.01686 1.03618 0.93047 1.21780 0.89962 0.99104 1.05819 0.87318 1.20706 0.96540 0.91165 1.01841 0.92234 0.99601 0.99638 0.75663 0.90980 0.92027 0.90256 0.89598 0.88870 0.87571 0.92374 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.26 14.88 5.43 85.63 0.46 15.35 16 10 N -0.71 -30.70 5.34 -466.78 -2.49 -33.19 16 11 C 0.50 20.70 7.16 87.66 0.63 21.33 16 12 O -0.61 -31.29 15.97 -3.04 -0.05 -31.33 16 13 C -0.10 -2.74 2.32 -11.17 -0.03 -2.76 16 14 H 0.11 2.82 7.00 -2.39 -0.02 2.80 16 15 C -0.11 -2.57 5.23 30.66 0.16 -2.41 16 16 C -0.08 -1.40 5.81 30.46 0.18 -1.22 16 17 C -0.14 -2.39 6.24 -10.98 -0.07 -2.45 16 18 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.18 -2.96 9.60 30.58 0.29 -2.67 16 20 C -0.15 -2.99 6.01 -11.64 -0.07 -3.06 16 21 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 22 C -0.06 -1.80 4.57 30.55 0.14 -1.66 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 25 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.41 14.65 7.67 -92.71 -0.71 13.94 16 27 H 0.07 1.69 7.26 -2.39 -0.02 1.67 16 28 H 0.06 1.56 8.02 -2.39 -0.02 1.54 16 29 H 0.08 1.19 8.03 -2.39 -0.02 1.17 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.60 7.14 -2.39 -0.02 1.58 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.82 8.02 -2.39 -0.02 1.80 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -70.72 278.61 2.54 -68.18 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.37 Total: 17.68 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 2.40 Total: -9.24 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -2.21 Total: -89.75 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -70.72 2.54 -68.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403537906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.597 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds