Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99761 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09003 * 109.26813 * 55.49016 * 13 12 11 15 15 C 1.52873 * 109.26578 * 296.02484 * 13 12 11 16 16 C 1.50975 * 109.82276 * 186.21592 * 15 13 12 17 17 C 1.52867 * 109.14360 * 73.33786 * 16 15 13 18 18 C 1.52720 * 110.15402 * 305.98772 * 17 16 15 19 19 H 1.09002 * 114.91145 * 232.15800 * 18 17 16 20 20 C 1.51360 * 115.51261 * 90.56604 * 18 17 16 21 21 C 1.52066 * 120.52139 * 21.46915 * 18 17 16 22 22 H 1.08995 * 115.93132 * 209.99291 * 21 18 17 23 23 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 25 25 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 26 26 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 27 27 H 1.09006 * 109.61886 * 304.57383 * 15 13 12 28 28 H 1.09000 * 109.61802 * 65.11642 * 15 13 12 29 29 H 1.09007 * 108.92347 * 313.68418 * 16 15 13 30 30 H 1.08996 * 109.90242 * 193.58753 * 16 15 13 31 31 H 1.09000 * 109.35988 * 185.78172 * 17 16 15 32 32 H 1.08997 * 109.24625 * 66.12439 * 17 16 15 33 33 H 1.09009 * 117.71883 * 140.47878 * 20 18 17 34 34 H 1.08997 * 117.12252 * 355.69705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.2108 -6.0793 -0.0112 14 1 2.8877 -5.9779 0.8372 15 6 3.0199 -6.0449 -1.3078 16 6 3.8966 -7.2708 -1.3969 17 6 3.0266 -8.4874 -1.7131 18 6 1.8943 -8.6035 -0.6949 19 1 1.8056 -9.5787 -0.2161 20 6 0.6115 -7.8889 -1.0621 21 6 1.4500 -7.3907 0.1076 22 1 1.0516 -7.5964 1.1011 23 1 -0.4849 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0002 25 1 0.5900 -4.9784 0.8842 26 1 0.5899 -4.9699 -0.8957 27 1 2.3428 -6.0549 -2.1621 28 1 3.6322 -5.1436 -1.3334 29 1 4.3973 -7.4177 -0.4398 30 1 4.6405 -7.1387 -2.1824 31 1 3.6387 -9.3886 -1.6769 32 1 2.6044 -8.3773 -2.7119 33 1 -0.3303 -8.3868 -0.8310 34 1 0.6178 -7.2948 -1.9759 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598208930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -39.797675 kcal Electronic energy + Delta-G solvation = -15255.095636 eV Core-core repulsion = 12766.423630 eV Total energy + Delta-G solvation = -2488.672006 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87390 -37.09778 -33.98199 -32.88992 -32.30068 -30.38259 -26.77219 -25.34802 -23.07180 -22.41663 -20.54929 -19.46969 -18.30802 -17.11055 -16.22043 -15.25441 -14.56295 -14.47374 -14.20142 -13.69621 -13.44234 -13.14855 -12.87103 -12.26521 -12.02493 -11.60073 -11.42206 -11.19408 -11.09516 -10.90184 -10.77851 -10.42691 -10.40253 -10.22721 -10.05983 -9.72169 -9.50535 -8.80252 -7.55373 -7.40371 -6.13603 -4.59114 3.18425 3.22999 3.25048 3.82827 4.14719 4.60655 4.64767 4.80827 4.84105 4.98673 5.19664 5.24113 5.33279 5.43836 5.54606 5.71390 5.79997 5.84142 5.90262 5.91683 5.96989 6.13331 6.23668 6.25511 6.33188 6.42248 6.47804 6.68091 6.77007 7.47460 7.99731 8.18274 8.38601 9.07026 9.61440 10.65846 10.85144 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.005781 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.923664 B = 4842.313351 C = 5188.944172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.142 3.858 13 C -0.064 4.064 14 H 0.075 0.925 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.088 4.088 18 C -0.150 4.150 19 H 0.097 0.903 20 C -0.178 4.178 21 C -0.129 4.129 22 H 0.098 0.902 23 H 0.268 0.732 24 H 0.378 0.622 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -13.744 -1.922 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.423 5.423 12 C 0.017 3.983 13 C -0.083 4.083 14 H 0.094 0.906 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.126 4.126 18 C -0.168 4.168 19 H 0.115 0.885 20 C -0.215 4.215 21 C -0.148 4.148 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.210 0.790 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.819 -13.642 -1.925 14.956 hybrid contribution 0.820 0.722 0.044 1.093 sum 6.640 -12.920 -1.881 14.648 Atomic orbital electron populations 1.70015 1.07050 1.27261 1.35510 1.25703 0.94593 1.00226 0.92652 0.86451 0.79817 0.81150 0.79395 1.19330 1.20588 1.19318 1.20862 0.93500 0.89522 1.54532 0.91565 1.18200 0.87199 0.82505 0.76307 1.90596 1.14139 1.86955 1.54835 1.46134 1.08445 1.05011 1.82705 1.20827 0.93563 0.83330 1.00551 1.20661 0.96685 0.92686 0.98234 0.90647 1.21219 0.98591 0.97829 0.97696 1.21159 0.97809 0.95057 1.01580 1.21068 0.95714 0.98195 0.97616 1.21852 0.96669 0.96395 1.01906 0.88484 1.22751 0.94787 1.03867 1.00102 1.21704 1.02537 0.94216 0.96346 0.88337 0.92123 0.78997 0.93589 0.93465 0.92069 0.91158 0.91999 0.92055 0.92047 0.91870 0.89235 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.54 11.83 55.55 0.66 -22.88 16 2 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 3 Si 0.91 20.41 29.56 -169.99 -5.02 15.38 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -15.75 9.54 -35.63 -0.34 -16.09 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.55 16.17 7.75 -12.99 -0.10 16.07 16 10 O -0.58 -19.40 15.02 5.20 0.08 -19.32 16 11 N -0.77 -17.52 5.31 -61.72 -0.33 -17.84 16 12 C 0.14 2.82 4.99 -4.04 -0.02 2.80 16 13 C -0.06 -0.94 2.34 -91.16 -0.21 -1.15 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.57 4.67 -27.81 -0.13 -1.70 16 16 C -0.12 -1.31 5.84 -27.82 -0.16 -1.48 16 17 C -0.09 -0.92 5.79 -26.94 -0.16 -1.07 16 18 C -0.15 -1.67 6.13 -92.07 -0.56 -2.23 16 19 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.18 -2.20 9.44 -27.92 -0.26 -2.46 16 21 C -0.13 -1.68 5.38 -91.92 -0.49 -2.18 16 22 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 24 H 0.38 7.57 7.59 -40.82 -0.31 7.26 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.88 7.05 -51.93 -0.37 0.52 16 28 H 0.07 0.99 7.24 -51.93 -0.38 0.61 16 29 H 0.06 0.67 8.04 -51.92 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 33 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.10 1.26 7.25 -51.93 -0.38 0.88 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -33.83 276.87 -8.18 -42.00 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.19 Total: 5.58 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.54 Total: -7.09 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.33 Total: -40.72 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.08 Total: -19.32 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.83 -8.18 -42.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598208930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.207 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds