Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99761 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09003 * 109.26813 * 55.49016 * 13 12 11 15 15 C 1.52873 * 109.26578 * 296.02484 * 13 12 11 16 16 C 1.50975 * 109.82276 * 186.21592 * 15 13 12 17 17 C 1.52867 * 109.14360 * 73.33786 * 16 15 13 18 18 C 1.52720 * 110.15402 * 305.98772 * 17 16 15 19 19 H 1.09002 * 114.91145 * 232.15800 * 18 17 16 20 20 C 1.51360 * 115.51261 * 90.56604 * 18 17 16 21 21 C 1.52066 * 120.52139 * 21.46915 * 18 17 16 22 22 H 1.08995 * 115.93132 * 209.99291 * 21 18 17 23 23 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 25 25 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 26 26 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 27 27 H 1.09006 * 109.61886 * 304.57383 * 15 13 12 28 28 H 1.09000 * 109.61802 * 65.11642 * 15 13 12 29 29 H 1.09007 * 108.92347 * 313.68418 * 16 15 13 30 30 H 1.08996 * 109.90242 * 193.58753 * 16 15 13 31 31 H 1.09000 * 109.35988 * 185.78172 * 17 16 15 32 32 H 1.08997 * 109.24625 * 66.12439 * 17 16 15 33 33 H 1.09009 * 117.71883 * 140.47878 * 20 18 17 34 34 H 1.08997 * 117.12252 * 355.69705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.2108 -6.0793 -0.0112 14 1 2.8877 -5.9779 0.8372 15 6 3.0199 -6.0449 -1.3078 16 6 3.8966 -7.2708 -1.3969 17 6 3.0266 -8.4874 -1.7131 18 6 1.8943 -8.6035 -0.6949 19 1 1.8056 -9.5787 -0.2161 20 6 0.6115 -7.8889 -1.0621 21 6 1.4500 -7.3907 0.1076 22 1 1.0516 -7.5964 1.1011 23 1 -0.4849 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0002 25 1 0.5900 -4.9784 0.8842 26 1 0.5899 -4.9699 -0.8957 27 1 2.3428 -6.0549 -2.1621 28 1 3.6322 -5.1436 -1.3334 29 1 4.3973 -7.4177 -0.4398 30 1 4.6405 -7.1387 -2.1824 31 1 3.6387 -9.3886 -1.6769 32 1 2.6044 -8.3773 -2.7119 33 1 -0.3303 -8.3868 -0.8310 34 1 0.6178 -7.2948 -1.9759 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598208930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -62.460138 kcal Electronic energy + Delta-G solvation = -15256.078354 eV Core-core repulsion = 12766.423630 eV Total energy + Delta-G solvation = -2489.654724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97398 -39.19157 -35.70020 -34.55940 -33.88918 -31.93969 -28.69470 -26.83073 -24.44349 -23.41950 -21.94849 -21.23843 -19.59981 -18.92097 -17.51210 -17.16283 -16.26992 -15.94243 -15.80585 -14.96156 -14.67953 -14.51700 -14.38570 -13.98476 -13.42979 -13.15326 -12.89553 -12.75739 -12.66211 -12.59001 -12.18833 -12.05364 -11.80515 -11.58495 -11.10002 -10.91647 -10.69539 -10.60284 -9.87331 -9.46676 -8.28886 -6.86044 1.40191 1.44182 1.55952 2.25216 2.47379 2.79471 3.20308 3.59791 3.68601 3.83120 3.85799 4.11701 4.18655 4.31771 4.37706 4.52461 4.62743 4.66210 4.83164 4.89037 4.94655 4.96060 5.10648 5.20976 5.27263 5.31404 5.35943 5.42321 5.42913 5.54547 5.87664 6.24447 6.28306 6.86332 7.56364 8.49630 8.67738 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.005781 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.923664 B = 4842.313351 C = 5188.944172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.146 3.854 13 C -0.050 4.050 14 H 0.084 0.916 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.091 4.091 18 C -0.126 4.126 19 H 0.118 0.882 20 C -0.189 4.189 21 C -0.148 4.148 22 H 0.102 0.898 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 -14.328 -2.009 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.022 3.978 13 C -0.069 4.069 14 H 0.102 0.898 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.128 4.128 18 C -0.144 4.144 19 H 0.136 0.864 20 C -0.226 4.226 21 C -0.167 4.167 22 H 0.120 0.880 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.344 -14.280 -2.014 16.661 hybrid contribution 0.013 0.848 0.064 0.851 sum 8.357 -13.432 -1.950 15.939 Atomic orbital electron populations 1.70195 1.09652 1.29016 1.36507 1.27024 0.95526 1.05083 0.91130 0.85039 0.78160 0.74522 0.80343 1.17746 1.19913 1.17720 1.21426 0.94769 0.90088 1.54855 0.89321 1.18671 0.86852 0.84531 0.76086 1.90547 1.16379 1.88097 1.57366 1.45806 1.09222 1.04707 1.80973 1.20900 0.94495 0.84015 0.98430 1.20525 0.95628 0.91323 0.99384 0.89768 1.21203 0.98526 0.99221 0.96294 1.21128 0.97602 0.93714 1.02592 1.21137 0.95574 0.98863 0.97209 1.21976 0.95779 0.96060 1.00582 0.86355 1.22790 0.96182 1.04402 0.99190 1.21683 1.03715 0.94342 0.96972 0.87963 0.91572 0.77136 0.95650 0.95697 0.93421 0.91904 0.91215 0.90627 0.89617 0.91958 0.88370 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.74 11.83 21.84 0.26 -51.48 16 2 C 0.03 1.55 5.50 85.30 0.47 2.02 16 3 Si 1.00 41.47 29.56 68.60 2.03 43.50 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.57 -33.36 9.54 24.83 0.24 -33.13 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 9 C 0.53 32.23 7.75 86.36 0.67 32.90 16 10 O -0.64 -44.48 15.02 -4.33 -0.06 -44.54 16 11 N -0.75 -35.20 5.31 -467.41 -2.48 -37.68 16 12 C 0.15 6.02 4.99 86.38 0.43 6.45 16 13 C -0.05 -1.45 2.34 -11.14 -0.03 -1.48 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -3.01 4.67 29.89 0.14 -2.87 16 16 C -0.11 -2.20 5.84 29.89 0.17 -2.02 16 17 C -0.09 -1.60 5.79 30.46 0.18 -1.42 16 18 C -0.13 -2.48 6.13 -11.73 -0.07 -2.55 16 19 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 20 C -0.19 -4.52 9.44 29.83 0.28 -4.24 16 21 C -0.15 -3.72 5.38 -11.64 -0.06 -3.78 16 22 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 24 H 0.39 15.78 7.59 -92.71 -0.70 15.08 16 25 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.37 7.05 -2.38 -0.02 1.35 16 28 H 0.06 1.72 7.24 -2.39 -0.02 1.70 16 29 H 0.07 1.28 8.04 -2.38 -0.02 1.26 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 33 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.08 2.18 7.25 -2.39 -0.02 2.16 16 Total: -1.00 -75.96 276.87 2.54 -73.42 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.38 Total: 26.91 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 2.42 Total: -10.12 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.22 Total: -89.16 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.06 Total: -44.54 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -75.96 2.54 -73.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598208930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.956 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds