Wall clock time and date at job start Mon Mar 30 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46729 * 2 1 4 4 C 1.34780 * 119.99848 * 173.66531 * 3 2 1 5 5 O 1.21688 * 119.99714 * 5.13900 * 4 3 2 6 6 C 1.46370 * 119.99834 * 185.13506 * 4 3 2 7 7 H 1.08003 * 120.00514 * 0.02562 * 6 4 3 8 8 C 1.40050 * 120.00025 * 180.02562 * 6 4 3 9 9 N 1.30672 * 119.99735 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 120.00255 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47218 * 90.00119 * 10 8 6 12 12 H 1.48507 * 109.47284 * 209.99881 * 10 8 6 13 13 H 1.48501 * 109.47202 * 329.99992 * 10 8 6 14 14 C 1.52998 * 109.47321 * 240.00266 * 2 1 3 15 15 C 1.52989 * 117.50053 * 123.06201 * 14 2 1 16 16 C 1.52992 * 117.50186 * 54.39623 * 14 2 1 17 17 C 1.52994 * 109.46753 * 119.99760 * 2 1 3 18 18 C 1.52996 * 117.50338 * 13.75130 * 17 2 1 19 19 C 1.52996 * 117.50235 * 305.08530 * 17 2 1 20 20 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47616 * 300.00036 * 1 2 3 22 22 H 1.09001 * 109.46898 * 60.00589 * 1 2 3 23 23 H 0.97005 * 120.00041 * 353.66420 * 3 2 1 24 24 H 0.97003 * 119.99946 * 180.02562 * 9 8 6 25 25 H 1.09006 * 115.54372 * 268.73116 * 14 2 1 26 26 H 1.08998 * 117.50249 * 359.97438 * 15 14 2 27 27 H 1.09008 * 117.50182 * 145.01842 * 15 14 2 28 28 H 1.09001 * 117.50397 * 214.97925 * 16 14 2 29 29 H 1.09009 * 117.50018 * 359.97438 * 16 14 2 30 30 H 1.09002 * 115.54704 * 159.42358 * 17 2 1 31 31 H 1.08993 * 117.49863 * 359.97438 * 18 17 2 32 32 H 1.09004 * 117.50106 * 145.01897 * 18 17 2 33 33 H 1.09001 * 117.50681 * 214.98049 * 19 17 2 34 34 H 1.09005 * 117.49921 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3367 1.6299 0.1288 5 8 4.1304 0.7078 0.1510 6 6 3.8136 3.0091 0.2418 7 1 3.1091 3.8275 0.2225 8 6 5.1836 3.2677 0.3751 9 7 6.0360 2.2776 0.3981 10 14 5.7922 5.0277 0.5201 11 1 5.8317 5.4215 1.9514 12 1 7.1559 5.1292 -0.0590 13 1 4.8729 5.9317 -0.2168 14 6 2.0401 -0.7212 -1.2492 15 6 2.9736 0.0542 -2.1809 16 6 1.5308 -0.2303 -2.6058 17 6 2.0399 -0.7212 1.2492 18 6 1.0326 -1.5532 2.0453 19 6 1.5400 -0.2225 2.6065 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.3927 2.1168 -0.0927 24 1 6.9849 2.4566 0.4907 25 1 2.2173 -1.7907 -1.1351 26 1 3.2241 1.0783 -1.9042 27 1 3.7648 -0.5052 -2.6802 28 1 1.3734 -0.9766 -3.3845 29 1 0.8319 0.6063 -2.6084 30 1 3.0647 -1.0887 1.1945 31 1 0.0065 -1.5865 1.6793 32 1 1.3947 -2.4680 2.5147 33 1 2.2355 -0.2623 3.4448 34 1 0.8480 0.6198 2.6095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598380837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:56 Heat of formation + Delta-G solvation = 18.633755 kcal Electronic energy + Delta-G solvation = -16149.110813 eV Core-core repulsion = 13662.972584 eV Total energy + Delta-G solvation = -2486.138229 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39235 -36.21951 -35.45601 -32.57252 -31.98592 -29.20865 -26.17252 -24.55926 -21.90387 -21.43611 -20.49711 -20.25655 -17.79681 -17.07476 -16.05727 -15.24685 -14.74548 -14.41072 -14.09039 -13.41475 -12.92062 -12.32551 -12.19474 -12.10081 -11.58810 -11.09735 -11.08501 -10.82063 -10.74733 -10.54715 -10.39351 -10.31802 -10.15477 -9.77438 -9.67723 -9.25473 -9.20371 -8.78591 -7.38896 -7.36076 -6.11069 -4.57206 3.15940 3.23332 3.25973 4.12492 4.35530 4.56335 4.66587 5.02041 5.20374 5.40554 5.51415 5.62748 5.68877 5.76027 5.84047 5.91847 5.96107 6.05886 6.10755 6.20800 6.35989 6.42600 6.48795 6.60155 6.67746 6.82733 6.83454 7.09863 7.25778 7.48335 8.00872 8.23129 8.41154 9.09113 9.65798 10.67322 10.90565 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.009757 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.252088 B = 2869.158520 C = 3244.981593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.244 3.756 3 N -0.758 5.758 4 C 0.563 3.437 5 O -0.564 6.564 6 C -0.549 4.549 7 H 0.063 0.937 8 C 0.090 3.910 9 N -0.767 5.767 10 Si 0.901 3.099 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.266 1.266 14 C -0.141 4.141 15 C -0.140 4.140 16 C -0.199 4.199 17 C -0.125 4.125 18 C -0.199 4.199 19 C -0.169 4.169 20 H 0.064 0.936 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.376 0.624 24 H 0.266 0.734 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -3.149 -0.709 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.156 3.844 3 N -0.413 5.413 4 C 0.366 3.634 5 O -0.445 6.445 6 C -0.587 4.587 7 H 0.081 0.919 8 C -0.129 4.129 9 N -0.396 5.396 10 Si 0.726 3.274 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.161 4.161 15 C -0.177 4.177 16 C -0.236 4.236 17 C -0.144 4.144 18 C -0.237 4.237 19 C -0.206 4.206 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.207 0.793 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.384 -3.892 -0.666 9.267 hybrid contribution 0.091 1.219 0.105 1.227 sum -8.293 -2.673 -0.560 8.731 Atomic orbital electron populations 1.22130 0.95440 1.01866 1.01467 1.18763 0.90941 0.83969 0.90680 1.46382 1.09335 1.04091 1.81488 1.17939 0.79195 0.90226 0.76016 1.90602 1.53626 1.46284 1.54021 1.20913 0.92329 0.91529 1.53893 0.91883 1.25633 0.96756 0.97685 0.92815 1.70014 1.02413 1.31553 1.35624 0.86480 0.78389 0.83642 0.78850 1.19914 1.20585 1.19055 1.22437 1.04956 0.98423 0.90263 1.22986 0.90588 1.03335 1.00840 1.22959 0.99656 1.03025 0.97937 1.22550 0.99073 1.01244 0.91539 1.23155 0.99612 0.94957 1.05950 1.22713 1.03456 0.96542 0.97873 0.91721 0.92570 0.92504 0.79255 0.92337 0.89013 0.86736 0.90603 0.90384 0.89709 0.86753 0.88933 0.89852 0.89734 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.03 37.16 0.26 -1.96 16 2 C 0.24 4.55 0.71 -131.82 -0.09 4.46 16 3 N -0.76 -16.24 4.45 -49.00 -0.22 -16.46 16 4 C 0.56 15.02 5.01 -12.99 -0.07 14.96 16 5 O -0.56 -16.75 11.47 5.20 0.06 -16.69 16 6 C -0.55 -15.17 9.54 -35.63 -0.34 -15.51 16 7 H 0.06 1.63 7.85 -52.48 -0.41 1.21 16 8 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 9 N -0.77 -22.55 11.83 55.55 0.66 -21.89 16 10 Si 0.90 20.17 29.56 -169.99 -5.02 15.14 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 C -0.14 -2.69 4.82 -90.63 -0.44 -3.13 16 15 C -0.14 -2.96 8.32 -26.70 -0.22 -3.18 16 16 C -0.20 -3.37 9.68 -26.70 -0.26 -3.63 16 17 C -0.12 -2.43 4.07 -90.63 -0.37 -2.79 16 18 C -0.20 -3.07 9.66 -26.69 -0.26 -3.32 16 19 C -0.17 -2.98 9.84 -26.69 -0.26 -3.24 16 20 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 21 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 22 H 0.06 0.78 6.96 -51.93 -0.36 0.42 16 23 H 0.38 7.35 8.47 -40.82 -0.35 7.01 16 24 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 25 H 0.09 1.70 8.07 -51.93 -0.42 1.28 16 26 H 0.11 2.83 5.11 -51.93 -0.27 2.56 16 27 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.38 7.25 -51.92 -0.38 1.00 16 30 H 0.11 2.66 7.17 -51.93 -0.37 2.28 16 31 H 0.09 1.25 5.89 -51.93 -0.31 0.95 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.50 7.29 -51.93 -0.38 1.12 16 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -30.81 271.42 -7.35 -38.16 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -4.77 Total: 12.60 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.14 Total: -14.95 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.44 Total: -38.35 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.06 Total: -16.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.81 -7.35 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598380837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.794 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds